Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL390023.1-201ENST00000428836 262 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 ZYG11AP1-201ENST00000430329 837 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL590103.1-201ENST00000434488 307 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 UBE2FP3-201ENST00000436366 524 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RPL7P28-201ENST00000437739 740 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC114495.1-201ENST00000441274 436 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 SUMO2P2-201ENST00000456482 255 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RNU7-136P-201ENST00000458819 69 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RPL7P1-201ENST00000468161 747 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 BET1P1-201ENST00000482276 359 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 RN7SL812P-201ENST00000493791 279 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC112198.1-201ENST00000505369 1220 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC005178.1-201ENST00000508392 440 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC109458.1-201ENST00000508858 316 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 MTCO3P44-201ENST00000510977 541 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 Y_RNA.688-201ENST00000516565 95 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 IGKV2D-36-201ENST00000518643 226 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC007954.1-201ENST00000554198 494 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 MAGOH2P-202ENST00000584384 429 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL109653.1-201ENST00000603091 248 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC122133.1-201ENST00000613964 233 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AC073968.1-201ENST00000618594 637 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL359715.5-201ENST00000623431 443 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 CU459211.1-201ENST00000635667 749 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 MIR3974-201ENST00000637126 96 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AL136964.1-201ENST00000622038 2990 ntBASIC4.01□□□□□ -1.77
COL28A1Q2UY09 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
COL28A1Q2UY09 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC097714.1-201ENST00000511272 1647 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 RPL21P132-201ENST00000331267 462 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC067945.1-201ENST00000342609 618 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 SNORD82-201ENST00000365530 70 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 RNU6-878P-201ENST00000384578 110 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4□□□□□ -1.77
COL28A1Q2UY09 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 DHFRP6-201ENST00000401776 268 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AL603766.1-201ENST00000407763 664 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 RN7SKP235-201ENST00000410662 305 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 TPMTP2-201ENST00000414372 726 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC090960.1-201ENST00000421072 306 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4□□□□□ -1.77
COL28A1Q2UY09 RPEP2-201ENST00000432149 701 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 HMGN2P31-201ENST00000432430 273 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 CYCSP43-201ENST00000438233 310 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC127537.2-201ENST00000439258 465 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 ELOCP8-201ENST00000439309 332 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 ELOCP15-201ENST00000442090 332 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL592156.1-201ENST00000508758 304 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4□□□□□ -1.77
COL28A1Q2UY09 LTV1P1-201ENST00000510683 1237 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 OSBPL9P2-201ENST00000526582 1228 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC013444.2-201ENST00000603317 787 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 Z99497.2-201ENST00000603634 310 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC121247.2-201ENST00000604776 136 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AL357080.1-201ENST00000617394 239 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC233309.1-201ENST00000619522 751 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 PCMTD1P7-201ENST00000634506 357 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 AC099063.3-201ENST00000642066 185 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms