Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 AL442639.1-201ENST00000625030 1899 ntBASIC5.06□□□□□ -1.6
RNF4P78317 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
RNF4P78317 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
RNF4P78317 MTND4P14-201ENST00000435799 1354 ntBASIC5.05□□□□□ -1.6
RNF4P78317 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.05□□□□□ -1.6
RNF4P78317 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 AC008758.3-201ENST00000507003 1829 ntBASIC5.05□□□□□ -1.6
RNF4P78317 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.05□□□□□ -1.6
RNF4P78317 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 AC092681.1-201ENST00000297369 291 ntBASIC5.05□□□□□ -1.6
RNF4P78317 RNA5SP335-201ENST00000363817 110 ntBASIC5.05□□□□□ -1.6
RNF4P78317 U3.12-201ENST00000364498 214 ntBASIC5.05□□□□□ -1.6
RNF4P78317 Y_RNA.445-201ENST00000384168 102 ntBASIC5.05□□□□□ -1.6
RNF4P78317 RNU6-1013P-201ENST00000384180 107 ntBASIC5.05□□□□□ -1.6
RNF4P78317 RNU1-77P-201ENST00000390868 162 ntBASIC5.05□□□□□ -1.6
RNF4P78317 RNA5SP107-201ENST00000411358 122 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC245054.2-201ENST00000415639 319 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 AC114491.1-201ENST00000416095 246 ntBASIC5.05□□□□□ -1.6
RNF4P78317 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.05□□□□□ -1.6
RNF4P78317 SRSF1P1-201ENST00000424058 520 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC093106.2-201ENST00000428212 385 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 NPM1P18-201ENST00000434232 732 ntBASIC5.05□□□□□ -1.6
RNF4P78317 CYCSP6-201ENST00000434498 302 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 RPL23AP43-201ENST00000446445 471 ntBASIC5.05□□□□□ -1.6
RNF4P78317 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.05□□□□□ -1.6
RNF4P78317 AC020550.1-201ENST00000447385 163 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.05□□□□□ -1.6
RNF4P78317 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 RNU6-1208P-201ENST00000459588 107 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC010683.1-201ENST00000473673 378 ntBASIC5.05□□□□□ -1.6
RNF4P78317 UBA52P7-201ENST00000486088 380 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC090096.1-201ENST00000489168 390 ntBASIC5.05□□□□□ -1.6
RNF4P78317 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.05□□□□□ -1.6
RNF4P78317 Y_RNA.711-201ENST00000516993 102 ntBASIC5.05□□□□□ -1.6
RNF4P78317 IGKV2D-36-201ENST00000518643 226 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC136777.2-201ENST00000522979 358 ntBASIC5.05□□□□□ -1.6
RNF4P78317 MTND4P7-201ENST00000523876 130 ntBASIC5.05□□□□□ -1.6
RNF4P78317 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 AP000763.2-201ENST00000540641 163 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.05□□□□□ -1.6
RNF4P78317 MIR3671-201ENST00000580455 88 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
RNF4P78317 FKBP1AP1-201ENST00000594588 318 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC025857.2-201ENST00000602711 238 ntBASIC5.05□□□□□ -1.6
RNF4P78317 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.05□□□□□ -1.6
RNF4P78317 MIR6826-201ENST00000617808 98 ntBASIC5.05□□□□□ -1.6
RNF4P78317 AC025034.2-201ENST00000623264 286 ntBASIC5.05□□□□□ -1.6
RNF4P78317 MTND5P42-201ENST00000637720 498 ntBASIC5.05□□□□□ -1.6
RNF4P78317 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
RNF4P78317 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
RNF4P78317 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RNF4P78317 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
RNF4P78317 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.04□□□□□ -1.6
RNF4P78317 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 AC114774.1-201ENST00000507410 1770 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.04□□□□□ -1.6
RNF4P78317 AC009229.4-201ENST00000623854 1947 ntBASIC5.04□□□□□ -1.6
RNF4P78317 SNORA33.2-201ENST00000365413 134 ntBASIC5.04□□□□□ -1.6
RNF4P78317 SNORD56.6-201ENST00000384569 71 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AL133388.1-201ENST00000404509 287 ntBASIC5.04□□□□□ -1.6
RNF4P78317 RPL31P2-201ENST00000413849 377 ntBASIC5.04□□□□□ -1.6
RNF4P78317 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.04□□□□□ -1.6
RNF4P78317 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 GSTM5P1-201ENST00000434751 660 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC016696.1-201ENST00000446949 318 ntBASIC5.04□□□□□ -1.6
RNF4P78317 RPL7L1P1-201ENST00000448259 785 ntBASIC5.04□□□□□ -1.6
RNF4P78317 BX276092.4-201ENST00000452056 248 ntBASIC5.04□□□□□ -1.6
RNF4P78317 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 RPS26P39-201ENST00000469206 341 ntBASIC5.04□□□□□ -1.6
RNF4P78317 OR2AO1P-201ENST00000476497 403 ntBASIC5.04□□□□□ -1.6
RNF4P78317 RN7SL447P-201ENST00000494711 245 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.04□□□□□ -1.6
RNF4P78317 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 HMGB3P15-201ENST00000507326 574 ntBASIC5.04□□□□□ -1.6
RNF4P78317 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.04□□□□□ -1.6
RNF4P78317 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms