Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A4P53420 AP001094.1-201ENST00000579805 193 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC061975.8-201ENST00000587058 721 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC010620.1-201ENST00000601088 1102 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 BMS1P7-201ENST00000602440 1052 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC007566.2-201ENST00000603642 413 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC135178.6-201ENST00000605314 398 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AL591516.1-201ENST00000611326 274 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 DUXAP10-204ENST00000612052 616 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A4P53420 AL445493.3-201ENST00000619568 477 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC078883.4-201ENST00000623218 367 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 HSPA8P4-201ENST00000511877 1920 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A4P53420 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A4P53420 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A4P53420 MIR196B-201ENST00000384852 84 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 MIR9-1-201ENST00000385198 89 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 RN7SKP58-201ENST00000411010 305 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A4P53420 AC005005.2-201ENST00000420779 380 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 RPL21P40-201ENST00000428586 483 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A4P53420 RPL7P34-201ENST00000433316 712 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AL513328.1-201ENST00000446460 224 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 OR6K5P-201ENST00000447050 945 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC3.09□□□□□ -1.91
COL4A4P53420 RPL23AP14-201ENST00000468281 468 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A4P53420 RNU4-18P-201ENST00000516751 149 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 IGKV2D-23-201ENST00000518179 286 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.09□□□□□ -1.91
COL4A4P53420 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.09□□□□□ -1.91
COL4A4P53420 AC068339.2-201ENST00000534395 618 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A4P53420 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A4P53420 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.09□□□□□ -1.91
COL4A4P53420 AGGF1P5-201ENST00000567900 919 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 OOSP1P2-201ENST00000579644 351 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AC098826.3-201ENST00000603823 466 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AL450336.1-201ENST00000605180 586 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 OR6R2P-201ENST00000609216 300 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 AP004607.9-201ENST00000618202 316 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 MIR7153-201ENST00000637758 57 ntBASIC3.09□□□□□ -1.91
COL4A4P53420 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
COL4A4P53420 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
COL4A4P53420 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.92
COL4A4P53420 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
COL4A4P53420 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC3.09□□□□□ -1.92
COL4A4P53420 AL353743.4-201ENST00000422653 1547 ntBASIC3.09□□□□□ -1.92
COL4A4P53420 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.92
COL4A4P53420 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 FAM133CP-201ENST00000332869 704 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.08□□□□□ -1.92
COL4A4P53420 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC245054.2-201ENST00000415639 319 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AL512637.2-201ENST00000431287 1256 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC105402.2-201ENST00000438503 358 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 MTND1P34-201ENST00000438556 671 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.08□□□□□ -1.92
COL4A4P53420 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC104982.1-201ENST00000478775 574 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 SRIP1-201ENST00000489235 288 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC021451.1-201ENST00000523498 1129 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 AC027176.1-201ENST00000560204 514 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC009101.1-201ENST00000568135 242 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC135507.1-201ENST00000607214 561 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC245008.1-201ENST00000608123 476 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC022306.2-201ENST00000617563 647 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC017104.5-201ENST00000637647 639 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC132825.7-201ENST00000638744 335 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC093908.1-201ENST00000623125 8092 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL4A4P53420 MIR148B-201ENST00000362252 99 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 RNU1-112P-201ENST00000364401 164 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms