Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 snoU13.8-201ENST00000458890 104 ntBASIC4.18□□□□□ -1.74
BDNFP23560 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.18□□□□□ -1.74
BDNFP23560 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 RPS3AP6-201ENST00000484430 795 ntBASIC4.18□□□□□ -1.74
BDNFP23560 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 AP001207.2-201ENST00000519490 539 ntBASIC4.18□□□□□ -1.74
BDNFP23560 NDUFA5P2-201ENST00000519723 344 ntBASIC4.18□□□□□ -1.74
BDNFP23560 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
BDNFP23560 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.18□□□□□ -1.74
BDNFP23560 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.18□□□□□ -1.74
BDNFP23560 AC034105.4-201ENST00000568304 277 ntBASIC4.18□□□□□ -1.74
BDNFP23560 MIR4509-3-201ENST00000578671 94 ntBASIC4.18□□□□□ -1.74
BDNFP23560 MIR5685-201ENST00000579080 79 ntBASIC4.18□□□□□ -1.74
BDNFP23560 MIR4509-2-201ENST00000583920 94 ntBASIC4.18□□□□□ -1.74
BDNFP23560 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.18□□□□□ -1.74
BDNFP23560 VN1R78P-201ENST00000597393 564 ntBASIC4.18□□□□□ -1.74
BDNFP23560 AC015726.1-201ENST00000602353 681 ntBASIC4.18□□□□□ -1.74
BDNFP23560 MIR4509-1-201ENST00000618224 94 ntBASIC4.18□□□□□ -1.74
BDNFP23560 AL354798.1-201ENST00000622505 329 ntBASIC4.18□□□□□ -1.74
BDNFP23560 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 AL773545.4-201ENST00000637262 310 ntBASIC4.18□□□□□ -1.74
BDNFP23560 AL513478.4-201ENST00000641636 310 ntBASIC4.18□□□□□ -1.74
BDNFP23560 AC099786.3-201ENST00000565735 1410 ntBASIC4.18□□□□□ -1.74
BDNFP23560 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
BDNFP23560 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
BDNFP23560 ZNF962P-201ENST00000443465 3140 ntBASIC4.18□□□□□ -1.74
BDNFP23560 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
BDNFP23560 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
BDNFP23560 AC103988.1-201ENST00000566382 2177 ntBASIC4.17□□□□□ -1.74
BDNFP23560 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
BDNFP23560 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 HSPA8P1-201ENST00000425843 1833 ntBASIC4.17□□□□□ -1.74
BDNFP23560 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 RN7SKP202-201ENST00000410439 330 ntBASIC4.17□□□□□ -1.74
BDNFP23560 Z97055.1-201ENST00000419730 712 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 USP9YP11-201ENST00000427537 717 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.17□□□□□ -1.74
BDNFP23560 AL592447.1-201ENST00000447592 540 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 MTND2P39-201ENST00000457230 764 ntBASIC4.17□□□□□ -1.74
BDNFP23560 RNA5SP310-201ENST00000459084 116 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC108860.1-201ENST00000484521 383 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC114322.1-201ENST00000506771 926 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 IGHV3-76-201ENST00000522465 295 ntBASIC4.17□□□□□ -1.74
BDNFP23560 FAM60DP-201ENST00000524174 632 ntBASIC4.17□□□□□ -1.74
BDNFP23560 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.17□□□□□ -1.74
BDNFP23560 MIR1254-2-201ENST00000579553 63 ntBASIC4.17□□□□□ -1.74
BDNFP23560 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.17□□□□□ -1.74
BDNFP23560 AC006130.2-201ENST00000586202 326 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AC011451.2-201ENST00000604303 598 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AL365400.2-201ENST00000605604 902 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.17□□□□□ -1.74
BDNFP23560 AC090912.3-201ENST00000609775 533 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AL158163.2-201ENST00000619110 700 ntBASIC4.17□□□□□ -1.74
BDNFP23560 AL359715.5-201ENST00000623431 443 ntBASIC4.17□□□□□ -1.74
BDNFP23560 MIR4275-201ENST00000636486 87 ntBASIC4.17□□□□□ -1.74
BDNFP23560 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.17□□□□□ -1.74
BDNFP23560 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.17□□□□□ -1.74
BDNFP23560 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.17□□□□□ -1.74
BDNFP23560 OR5BR1P-201ENST00000524992 1330 ntBASIC4.17□□□□□ -1.74
BDNFP23560 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.17□□□□□ -1.74
BDNFP23560 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
BDNFP23560 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BDNFP23560 MTCO1P9-201ENST00000505577 1534 ntBASIC4.16□□□□□ -1.74
BDNFP23560 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BDNFP23560 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
BDNFP23560 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BDNFP23560 SNORD74.4-201ENST00000364129 80 ntBASIC4.16□□□□□ -1.74
BDNFP23560 Y_RNA.472-201ENST00000384322 102 ntBASIC4.16□□□□□ -1.74
BDNFP23560 RNU6-1176P-201ENST00000390955 107 ntBASIC4.16□□□□□ -1.74
BDNFP23560 RNU1-101P-201ENST00000391171 127 ntBASIC4.16□□□□□ -1.74
BDNFP23560 RPS4XP3-201ENST00000398541 413 ntBASIC4.16□□□□□ -1.74
BDNFP23560 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.16□□□□□ -1.74
BDNFP23560 SNORA3C-201ENST00000408792 125 ntBASIC4.16□□□□□ -1.74
BDNFP23560 CYCSP19-201ENST00000411715 316 ntBASIC4.16□□□□□ -1.74
BDNFP23560 RPL7AP73-201ENST00000413490 353 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms