Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 USP9YP21-201ENST00000420603 432 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 USP9YP11-201ENST00000427537 717 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 MTND1P20-201ENST00000430341 950 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 MTCO3P5-201ENST00000433620 714 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AL691517.1-201ENST00000440833 1235 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC245517.2-201ENST00000442890 346 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 MTND1P29-201ENST00000448112 647 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 UQCRHP3-201ENST00000451503 251 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 HSPE1P6-201ENST00000479457 291 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC112673.1-201ENST00000513168 575 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AL117351.2-201ENST00000513571 157 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC112198.4-201ENST00000515450 351 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 MTATP6P15-201ENST00000527233 835 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC008751.2-201ENST00000597885 980 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC022022.2-201ENST00000602989 360 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC064859.1-201ENST00000624741 174 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC093536.2-201ENST00000565257 1406 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC046144.1-201ENST00000478559 1853 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A4P53420 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL4A4P53420 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A4P53420 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A4P53420 SNORA67.4-201ENST00000384688 142 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC002524.1-201ENST00000411687 547 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 USP9YP10-201ENST00000454868 628 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 NECAP1P2-201ENST00000455668 727 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 MTND2P30-201ENST00000456663 382 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A4P53420 RN7SL75P-201ENST00000461926 281 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 HMGN1P8-201ENST00000463578 288 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 MTND4P2-201ENST00000507767 1203 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 USP9YP5-201ENST00000511770 630 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 RN7SKP244-201ENST00000516513 307 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
COL4A4P53420 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 HAUS1P3-201ENST00000523909 662 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC087894.1-201ENST00000538359 518 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.11□□□□□ -1.91
COL4A4P53420 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC138761.3-201ENST00000579993 334 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC234772.3-201ENST00000602277 528 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC069304.3-201ENST00000603938 1084 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC011939.3-201ENST00000613686 466 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC007318.2-201ENST00000620999 243 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 PLCE1P1-201ENST00000622094 305 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC092628.2-201ENST00000622492 339 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
COL4A4P53420 AL590396.4-201ENST00000636779 956 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC073869.7-201ENST00000640874 297 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A4P53420 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL4A4P53420 RAD1P1-201ENST00000231383 813 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 SNORD116-1-201ENST00000384335 95 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC110754.1-201ENST00000399740 601 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.1□□□□□ -1.91
COL4A4P53420 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC233981.1-201ENST00000423224 461 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 XKRYP1-201ENST00000423438 492 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 XKRYP2-201ENST00000432915 492 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 MUPP-201ENST00000438111 566 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 RPS29P6-201ENST00000438196 145 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 KATNBL1P3-201ENST00000443475 909 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC104058.1-201ENST00000448028 297 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 DUXAP8-207ENST00000456786 622 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC096992.1-201ENST00000459808 709 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 RPS27P29-201ENST00000463110 252 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A4P53420 RN7SKP43-201ENST00000516173 320 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.1□□□□□ -1.91
COL4A4P53420 AC010376.1-201ENST00000522101 334 ntBASIC3.1□□□□□ -1.91
COL4A4P53420 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 152.5 ms