Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL356421.1-201ENST00000403255 413 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 USP9YP6-201ENST00000413550 854 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC004987.3-201ENST00000413879 771 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 MTATP6P27-201ENST00000416987 621 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 BX510359.2-201ENST00000417920 305 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC233728.2-201ENST00000425348 757 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RWDD4P2-201ENST00000426392 563 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 FCF1P1-201ENST00000432690 571 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 NEK4P1-201ENST00000433383 879 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC104850.1-201ENST00000435940 476 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 ARPC3P1-201ENST00000437218 533 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RPS4XP4-201ENST00000443195 763 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL671855.1-201ENST00000446875 1203 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RPS20P32-201ENST00000456044 356 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RPL7P15-201ENST00000461190 712 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RPS20P21-201ENST00000466859 343 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC104563.1-201ENST00000476147 376 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC069439.1-201ENST00000494739 167 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC019235.1-201ENST00000503847 207 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 KCTD9P5-201ENST00000504141 1170 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 Y_RNA.672-201ENST00000516289 104 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RNU1-6P-201ENST00000516290 144 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 RAD21-204ENST00000518055 896 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC022616.6-201ENST00000520479 119 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC005868.1-201ENST00000536421 331 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 LSM3P2-201ENST00000551246 273 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL161713.1-201ENST00000555538 145 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC009101.1-201ENST00000568135 242 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC034268.2-201ENST00000571784 482 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 SLC25A36P1-201ENST00000590111 465 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL359999.1-201ENST00000604513 294 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC055876.5-201ENST00000605667 259 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 OR10AB1P-201ENST00000609613 938 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 U6.42-201ENST00000618440 107 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC091905.1-201ENST00000624400 311 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 AC011755.1-201ENST00000623763 2049 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD3P31249 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 AL122126.1-201ENST00000546905 1318 ntBASIC3.69□□□□□ -1.82
HOXD3P31249 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD3P31249 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD3P31249 ERCC6-202ENST00000374127 1782 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC100778.3-201ENST00000580060 1750 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD3P31249 MAPK10-349ENST00000641767 3661 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD3P31249 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD3P31249 AP001273.1-201ENST00000624493 3152 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC024560.2-201ENST00000507981 1497 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC139713.2-214ENST00000642059 1811 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD3P31249 RNU6-282P-201ENST00000365357 103 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD3P31249 RNU6-730P-201ENST00000383954 104 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 Y_RNA.450-201ENST00000384198 113 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 U3.22-201ENST00000391120 215 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 RNU4-55P-201ENST00000410731 137 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 RSU1P3-201ENST00000412878 835 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC012065.2-201ENST00000421295 375 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD3P31249 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXD3P31249 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXD3P31249 HMGB1P15-201ENST00000453854 435 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC103987.1-201ENST00000473394 348 ntBASIC3.68□□□□□ -1.82
HOXD3P31249 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD3P31249 AC114967.1-201ENST00000504890 259 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms