Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MTND5P24-201ENST00000438892 1767 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 ARPC3P5-201ENST00000448802 534 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MTCO3P11-201ENST00000455103 774 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC097493.1-201ENST00000463958 372 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 RN7SL271P-201ENST00000487601 295 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC108729.1-201ENST00000487812 947 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC146944.2-203ENST00000502493 354 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC139495.1-202ENST00000513164 354 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 IGKV2-38-201ENST00000517443 247 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AP000776.1-201ENST00000530032 1663 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MTCO2P15-201ENST00000532655 656 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC106785.1-201ENST00000565935 262 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC141257.3-201ENST00000572906 215 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 MIR5186-201ENST00000577504 120 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 MIR3690-201ENST00000580266 75 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 SNORD84-203ENST00000584275 78 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC006270.3-201ENST00000605967 1036 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC006023.2-201ENST00000609916 167 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC245297.2-201ENST00000610119 565 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AL133383.2-201ENST00000622958 2336 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AP002782.1-201ENST00000623107 614 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 AC048347.1-201ENST00000624621 427 ntBASIC4.08□□□□□ -1.76
VPS28Q9UK41 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS28Q9UK41 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
VPS28Q9UK41 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AP002001.2-201ENST00000529025 1469 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 RNA5SP399-201ENST00000364003 117 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 RNU2-71P-201ENST00000411395 189 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC245052.5-201ENST00000416320 649 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 MTCO2P20-201ENST00000437339 673 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 RPS29P7-201ENST00000439662 171 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 HSPE1P28-201ENST00000443139 211 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 NECAP1P2-201ENST00000455668 727 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 VN1R17P-201ENST00000472048 1090 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 RPL7P18-201ENST00000478965 734 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC069499.1-201ENST00000489433 509 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 RPL31P61-201ENST00000496160 376 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 RNA5SP179-201ENST00000517284 121 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 OR5AK1P-201ENST00000524837 922 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC087481.2-201ENST00000565492 330 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 VN1R78P-201ENST00000597393 564 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC025946.2-201ENST00000603398 234 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC091167.4-201ENST00000605079 184 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC128687.2-201ENST00000609657 566 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 MIR486-1-201ENST00000612171 68 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AL139089.1-201ENST00000620372 975 ntBASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS28Q9UK41 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS28Q9UK41 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 RPL23AP57-201ENST00000332361 466 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 RPL7AP73-201ENST00000413490 353 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC127526.1-201ENST00000417526 366 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AL590233.1-201ENST00000430017 456 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 EZH2P1-201ENST00000431167 291 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 RPS25P9-201ENST00000435591 252 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 MTND3P1-201ENST00000441336 220 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 FGF7P5-201ENST00000441829 291 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC239367.2-201ENST00000447309 705 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 RPL21P104-201ENST00000464143 478 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms