Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-707P-201ENST00000364647 95 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RNU6-224P-201ENST00000384055 107 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RNU6-1300P-201ENST00000391046 108 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC244098.2-201ENST00000422068 99 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC002075.2-201ENST00000425207 252 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 DPRXP1-201ENST00000426312 460 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 MTCO1P3-201ENST00000429327 192 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RPL26P28-201ENST00000451325 435 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 FCF1P6-201ENST00000456841 595 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RPL7L1P8-201ENST00000469911 741 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 MTCYBP37-201ENST00000510642 1133 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC093752.1-206ENST00000511823 336 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 RNU6-276P-201ENST00000516114 96 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 IGHV3-32-201ENST00000519182 355 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AP000619.3-201ENST00000535634 1127 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 MIR4738-201ENST00000579134 87 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AL354976.1-201ENST00000613843 387 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC090116.1-201ENST00000615679 446 ntBASIC3.51□□□□□ -1.85
LHX3Q9UBR4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
LHX3Q9UBR4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL031985.3-201ENST00000565390 2449 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC027287.1-201ENST00000553115 1453 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MIR3074-201ENST00000384885 81 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL121972.1-201ENST00000402023 252 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 BX842559.1-201ENST00000419615 532 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MTCO3P1-205ENST00000422088 832 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL354692.1-201ENST00000423044 315 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 PRDX3P3-201ENST00000447765 522 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC004022.1-201ENST00000447766 1066 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 TVP23BP2-201ENST00000455082 615 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 SYPL1P1-201ENST00000473622 768 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 FCF1P3-201ENST00000496394 590 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC078918.1-201ENST00000498515 228 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MTCO3P44-201ENST00000510977 541 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 FTH1P9-201ENST00000513251 355 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 SNORA19.3-201ENST00000516165 130 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 DUXAP2-201ENST00000519198 589 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 BNIP3P38-201ENST00000601117 544 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC096947.1-201ENST00000603233 470 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC024060.1-201ENST00000607052 494 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC078899.5-201ENST00000612475 178 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AC104985.3-201ENST00000623479 597 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 AL157700.1-201ENST00000561973 1432 ntBASIC3.5□□□□□ -1.85
LHX3Q9UBR4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LHX3Q9UBR4 MTCO1P12-201ENST00000414273 1543 ntBASIC3.49□□□□□ -1.85
LHX3Q9UBR4 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LHX3Q9UBR4 AL645568.2-201ENST00000432815 1337 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms