Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn11aQ9R053 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Gm14057-201ENSMUST00000120631 482 ntBASIC19.37■□□□□ 0.69
Scn11aQ9R053 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn11aQ9R053 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Gm13127-201ENSMUST00000118978 1389 ntBASIC19.36■□□□□ 0.69
Scn11aQ9R053 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Scn11aQ9R053 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 AC158982.1-201ENSMUST00000228377 901 ntBASIC19.36■□□□□ 0.69
Scn11aQ9R053 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn11aQ9R053 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Gm27321-201ENSMUST00000185021 205 ntBASIC19.35■□□□□ 0.69
Scn11aQ9R053 AC084391.1-201ENSMUST00000200651 141 ntBASIC19.35■□□□□ 0.69
Scn11aQ9R053 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.35■□□□□ 0.69
Scn11aQ9R053 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scn11aQ9R053 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC19.34■□□□□ 0.69
Scn11aQ9R053 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC19.34■□□□□ 0.69
Scn11aQ9R053 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scn11aQ9R053 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scn11aQ9R053 AV026068-213ENSMUST00000223675 1171 ntBASIC19.33■□□□□ 0.68
Scn11aQ9R053 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn11aQ9R053 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Scn11aQ9R053 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn11aQ9R053 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC19.33■□□□□ 0.68
Scn11aQ9R053 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scn11aQ9R053 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scn11aQ9R053 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms