Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ube3bQ9ES34 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Gm12644-201ENSMUST00000119935 606 ntBASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.46■□□□□ 0.71
Ube3bQ9ES34 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Gm44487-201ENSMUST00000205145 325 ntBASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Ube3bQ9ES34 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 AC127349.1-201ENSMUST00000224590 266 ntBASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ube3bQ9ES34 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Gm43347-201ENSMUST00000200226 580 ntBASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ube3bQ9ES34 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ube3bQ9ES34 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms