Protein–RNA interactions for Protein: Q91VN6

Ddx41, Probable ATP-dependent RNA helicase DDX41, mousemouse

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx41Q91VN6 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx41Q91VN6 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Gm11336-201ENSMUST00000118168 334 ntBASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Olfr129-201ENSMUST00000122318 993 ntBASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Mir3081-201ENSMUST00000175305 84 ntBASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx41Q91VN6 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx41Q91VN6 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Phf7-203ENSMUST00000226565 1971 ntBASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx41Q91VN6 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Ddx41Q91VN6 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx41Q91VN6 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms