Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Brf1Q8CFK2 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Brf1Q8CFK2 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.82■□□□□ 0.76
Brf1Q8CFK2 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gm25016-201ENSMUST00000158399 131 ntBASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gm29518-201ENSMUST00000190858 372 ntBASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gm17808-201ENSMUST00000200859 894 ntBASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Brf1Q8CFK2 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Brf1Q8CFK2 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Gm11950-201ENSMUST00000121615 838 ntBASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Brf1Q8CFK2 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Brf1Q8CFK2 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms