Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim47Q8C0E3 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Trim47Q8C0E3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Gm36967-201ENSMUST00000193814 266 ntBASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim47Q8C0E3 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Gm13312-201ENSMUST00000119631 718 ntBASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Gm12895-201ENSMUST00000122214 226 ntBASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim47Q8C0E3 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim47Q8C0E3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms