Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Usp47Q8BY87 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Mir6404-201ENSMUST00000183699 94 ntBASIC23.09■■□□□ 1.29
Usp47Q8BY87 AC160338.1-201ENSMUST00000214232 705 ntBASIC23.09■■□□□ 1.29
Usp47Q8BY87 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Usp47Q8BY87 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp47Q8BY87 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
Usp47Q8BY87 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp47Q8BY87 Gm25406-201ENSMUST00000157599 105 ntBASIC23.08■■□□□ 1.29
Usp47Q8BY87 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC23.08■■□□□ 1.29
Usp47Q8BY87 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Usp47Q8BY87 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC23.08■■□□□ 1.29
Usp47Q8BY87 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
Usp47Q8BY87 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Usp47Q8BY87 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Gm13884-201ENSMUST00000118103 829 ntBASIC23.07■■□□□ 1.28
Usp47Q8BY87 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Gm25745-201ENSMUST00000174945 133 ntBASIC23.07■■□□□ 1.28
Usp47Q8BY87 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Usp47Q8BY87 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Vti1a-206ENSMUST00000225529 1244 ntBASIC23.06■■□□□ 1.28
Usp47Q8BY87 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC23.06■■□□□ 1.28
Usp47Q8BY87 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC23.06■■□□□ 1.28
Usp47Q8BY87 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Usp47Q8BY87 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Usp47Q8BY87 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC23.04■■□□□ 1.28
Usp47Q8BY87 Gm7506-201ENSMUST00000207758 815 ntBASIC23.04■■□□□ 1.28
Usp47Q8BY87 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Usp47Q8BY87 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms