Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 AC154855.1-201ENSMUST00000227353 1458 ntBASIC17.12■□□□□ 0.33
Ccdc40Q8BI79 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc40Q8BI79 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc40Q8BI79 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gm2274-201ENSMUST00000184539 609 ntBASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gm10710-201ENSMUST00000047876 3971 ntBASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.09■□□□□ 0.33
Ccdc40Q8BI79 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc40Q8BI79 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm16061-201ENSMUST00000122167 857 ntBASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm13474-201ENSMUST00000122466 815 ntBASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm4217-201ENSMUST00000182243 1002 ntBASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc40Q8BI79 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms