Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Gm25745-201ENSMUST00000174945 133 ntBASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ddx58Q6Q899 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ddx58Q6Q899 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Gm44771-201ENSMUST00000206975 626 ntBASIC20.23■□□□□ 0.83
Ddx58Q6Q899 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ddx58Q6Q899 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ddx58Q6Q899 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44357-201ENSMUST00000195897 142 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm19658-201ENSMUST00000196231 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44367-201ENSMUST00000196836 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44350-201ENSMUST00000197197 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44390-201ENSMUST00000197533 144 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44313-201ENSMUST00000198018 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44486-201ENSMUST00000198508 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44314-201ENSMUST00000199263 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44394-201ENSMUST00000199558 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44484-201ENSMUST00000199873 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44466-201ENSMUST00000200264 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm44359-201ENSMUST00000200671 138 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm6296-201ENSMUST00000222599 943 ntBASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ddx58Q6Q899 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms