Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sh3rf1Q69ZI1 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gm2274-201ENSMUST00000184539 609 ntBASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gm18032-201ENSMUST00000222541 538 ntBASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 AL590614.2-201ENSMUST00000225374 1937 ntBASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sh3rf1Q69ZI1 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sh3rf1Q69ZI1 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.64■□□□□ 0.26
Sh3rf1Q69ZI1 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Sh3rf1Q69ZI1 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sh3rf1Q69ZI1 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 AA414768-201ENSMUST00000121924 1257 ntBASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Sh3rf1Q69ZI1 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Sh3rf1Q69ZI1 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms