Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.28■□□□□ 0.04
ShhQ62226 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.28■□□□□ 0.04
ShhQ62226 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ShhQ62226 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ShhQ62226 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Mir770-201ENSMUST00000103252 94 ntBASIC15.27■□□□□ 0.04
ShhQ62226 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ShhQ62226 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC15.27■□□□□ 0.04
ShhQ62226 Gm18206-201ENSMUST00000207027 926 ntBASIC15.27■□□□□ 0.04
ShhQ62226 Gm18195-201ENSMUST00000207604 706 ntBASIC15.27■□□□□ 0.04
ShhQ62226 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ShhQ62226 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ShhQ62226 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
ShhQ62226 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ShhQ62226 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ShhQ62226 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ShhQ62226 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.26■□□□□ 0.03
ShhQ62226 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.26■□□□□ 0.03
ShhQ62226 Gm27000-201ENSMUST00000182943 842 ntBASIC15.26■□□□□ 0.03
ShhQ62226 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.26■□□□□ 0.03
ShhQ62226 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ShhQ62226 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ShhQ62226 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ShhQ62226 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ShhQ62226 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
ShhQ62226 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.25■□□□□ 0.03
ShhQ62226 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC15.25■□□□□ 0.03
ShhQ62226 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
ShhQ62226 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
ShhQ62226 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.24■□□□□ 0.03
ShhQ62226 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Gm45774-201ENSMUST00000211992 2665 ntBASIC15.24■□□□□ 0.03
ShhQ62226 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ShhQ62226 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms