Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC20.19■□□□□ 0.82
Trim27Q62158 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Trim27Q62158 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.19■□□□□ 0.82
Trim27Q62158 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Trim27Q62158 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Trim27Q62158 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Trim27Q62158 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Trim27Q62158 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trim27Q62158 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC20.17■□□□□ 0.82
Trim27Q62158 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Gm13836-201ENSMUST00000121159 501 ntBASIC20.17■□□□□ 0.82
Trim27Q62158 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.17■□□□□ 0.82
Trim27Q62158 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC20.17■□□□□ 0.82
Trim27Q62158 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Trim27Q62158 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Gm9013-201ENSMUST00000132939 882 ntBASIC20.16■□□□□ 0.82
Trim27Q62158 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim27Q62158 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC20.16■□□□□ 0.82
Trim27Q62158 Gm5587-201ENSMUST00000206270 674 ntBASIC20.16■□□□□ 0.82
Trim27Q62158 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Trim27Q62158 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.16■□□□□ 0.82
Trim27Q62158 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.16■□□□□ 0.82
Trim27Q62158 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trim27Q62158 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Trim27Q62158 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Trim27Q62158 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.15■□□□□ 0.82
Trim27Q62158 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trim27Q62158 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Trim27Q62158 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trim27Q62158 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.15■□□□□ 0.82
Trim27Q62158 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim27Q62158 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Trim27Q62158 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim27Q62158 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trim27Q62158 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Gm6659-201ENSMUST00000174752 547 ntBASIC20.14■□□□□ 0.81
Trim27Q62158 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC20.14■□□□□ 0.81
Trim27Q62158 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trim27Q62158 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trim27Q62158 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms