Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm18622-201ENSMUST00000219361 595 ntBASIC18.32■□□□□ 0.52
Col11a1Q61245 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col11a1Q61245 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col11a1Q61245 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.32■□□□□ 0.52
Col11a1Q61245 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.32■□□□□ 0.52
Col11a1Q61245 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col11a1Q61245 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col11a1Q61245 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.32■□□□□ 0.52
Col11a1Q61245 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col11a1Q61245 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col11a1Q61245 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Gm11745-201ENSMUST00000121669 448 ntBASIC18.31■□□□□ 0.52
Col11a1Q61245 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.31■□□□□ 0.52
Col11a1Q61245 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Gm17271-201ENSMUST00000165535 355 ntBASIC18.31■□□□□ 0.52
Col11a1Q61245 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.31■□□□□ 0.52
Col11a1Q61245 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col11a1Q61245 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Gm12892-201ENSMUST00000117367 1146 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC18.3■□□□□ 0.52
Col11a1Q61245 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Gm8969-201ENSMUST00000199694 526 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Gm45612-201ENSMUST00000211320 160 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC18.3■□□□□ 0.52
Col11a1Q61245 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.3■□□□□ 0.52
Col11a1Q61245 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col11a1Q61245 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Col11a1Q61245 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.3■□□□□ 0.52
Col11a1Q61245 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col11a1Q61245 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col11a1Q61245 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col11a1Q61245 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.28■□□□□ 0.52
Col11a1Q61245 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col11a1Q61245 Gm25948-201ENSMUST00000175334 112 ntBASIC18.28■□□□□ 0.52
Col11a1Q61245 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.28■□□□□ 0.52
Col11a1Q61245 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col11a1Q61245 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Col11a1Q61245 Mir6990-201ENSMUST00000183724 91 ntBASIC18.28■□□□□ 0.52
Col11a1Q61245 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC18.27■□□□□ 0.52
Col11a1Q61245 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.27■□□□□ 0.52
Col11a1Q61245 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Gm45747-201ENSMUST00000212203 999 ntBASIC18.27■□□□□ 0.52
Col11a1Q61245 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col11a1Q61245 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Col11a1Q61245 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col11a1Q61245 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC18.27■□□□□ 0.51
Col11a1Q61245 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col11a1Q61245 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col11a1Q61245 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col11a1Q61245 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Col11a1Q61245 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
Col11a1Q61245 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC18.26■□□□□ 0.51
Col11a1Q61245 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.26■□□□□ 0.51
Col11a1Q61245 Gm23547-201ENSMUST00000158210 271 ntBASIC18.26■□□□□ 0.51
Col11a1Q61245 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col11a1Q61245 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.26■□□□□ 0.51
Col11a1Q61245 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms