Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Col12a1Q60847 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC16.15■□□□□ 0.18
Col12a1Q60847 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.15■□□□□ 0.18
Col12a1Q60847 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col12a1Q60847 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col12a1Q60847 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.15■□□□□ 0.18
Col12a1Q60847 Gm6627-201ENSMUST00000218299 2386 ntBASIC16.14■□□□□ 0.18
Col12a1Q60847 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.18
Col12a1Q60847 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
Col12a1Q60847 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
Col12a1Q60847 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col12a1Q60847 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Col12a1Q60847 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Col12a1Q60847 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.14■□□□□ 0.17
Col12a1Q60847 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col12a1Q60847 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col12a1Q60847 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.14■□□□□ 0.17
Col12a1Q60847 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.13■□□□□ 0.17
Col12a1Q60847 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gm9172-201ENSMUST00000212092 954 ntBASIC16.13■□□□□ 0.17
Col12a1Q60847 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.13■□□□□ 0.17
Col12a1Q60847 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Col12a1Q60847 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gm13223-201ENSMUST00000118609 747 ntBASIC16.13■□□□□ 0.17
Col12a1Q60847 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.13■□□□□ 0.17
Col12a1Q60847 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col12a1Q60847 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col12a1Q60847 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.12■□□□□ 0.17
Col12a1Q60847 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Gm17271-201ENSMUST00000165535 355 ntBASIC16.12■□□□□ 0.17
Col12a1Q60847 Gm27437-201ENSMUST00000183429 107 ntBASIC16.12■□□□□ 0.17
Col12a1Q60847 Gm43474-201ENSMUST00000196415 774 ntBASIC16.12■□□□□ 0.17
Col12a1Q60847 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col12a1Q60847 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Col12a1Q60847 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Mir449b-201ENSMUST00000104833 80 ntBASIC16.11■□□□□ 0.17
Col12a1Q60847 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col12a1Q60847 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC16.11■□□□□ 0.17
Col12a1Q60847 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms