Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Vps54Q5SPW0 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Vps54Q5SPW0 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.67■□□□□ 0.74
Vps54Q5SPW0 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Vps54Q5SPW0 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.66■□□□□ 0.74
Vps54Q5SPW0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Vps54Q5SPW0 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Vps54Q5SPW0 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Vps54Q5SPW0 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Vps54Q5SPW0 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms