Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.66■□□□□ 0.58
Usp28Q5I043 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Usp28Q5I043 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Usp28Q5I043 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Usp28Q5I043 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.65■□□□□ 0.58
Usp28Q5I043 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.65■□□□□ 0.58
Usp28Q5I043 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.65■□□□□ 0.58
Usp28Q5I043 Gm37055-201ENSMUST00000191866 133 ntBASIC18.65■□□□□ 0.58
Usp28Q5I043 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.65■□□□□ 0.58
Usp28Q5I043 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.65■□□□□ 0.58
Usp28Q5I043 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp28Q5I043 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp28Q5I043 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Usp28Q5I043 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp28Q5I043 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp28Q5I043 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Usp28Q5I043 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp28Q5I043 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.64■□□□□ 0.57
Usp28Q5I043 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.64■□□□□ 0.57
Usp28Q5I043 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Usp28Q5I043 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp28Q5I043 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Usp28Q5I043 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Usp28Q5I043 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.63■□□□□ 0.57
Usp28Q5I043 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp28Q5I043 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp28Q5I043 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.62■□□□□ 0.57
Usp28Q5I043 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Gm7213-201ENSMUST00000215977 950 ntBASIC18.62■□□□□ 0.57
Usp28Q5I043 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp28Q5I043 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp28Q5I043 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp28Q5I043 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
Usp28Q5I043 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp28Q5I043 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.61■□□□□ 0.57
Usp28Q5I043 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Usp28Q5I043 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp28Q5I043 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp28Q5I043 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms