Protein–RNA interactions for Protein: Q3V0C5

Usp48, Ubiquitin carboxyl-terminal hydrolase 48, mousemouse

Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp48Q3V0C5 AC159093.1-201ENSMUST00000227779 380 ntBASIC20.26■□□□□ 0.83
Usp48Q3V0C5 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp48Q3V0C5 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Usp48Q3V0C5 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp48Q3V0C5 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp48Q3V0C5 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Gm43575-201ENSMUST00000196420 516 ntBASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
Usp48Q3V0C5 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Gm11779-201ENSMUST00000118541 368 ntBASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Gm45244-201ENSMUST00000211328 2200 ntBASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp48Q3V0C5 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Gm10060-201ENSMUST00000212002 111 ntBASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp48Q3V0C5 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.22■□□□□ 0.83
Usp48Q3V0C5 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.22■□□□□ 0.83
Usp48Q3V0C5 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp48Q3V0C5 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms