Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.31■□□□□ 0.68
Limch1Q3UH68 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Limch1Q3UH68 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Gfra2-202ENSMUST00000227633 1480 ntBASIC19.3■□□□□ 0.68
Limch1Q3UH68 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Gm17808-201ENSMUST00000200859 894 ntBASIC19.3■□□□□ 0.68
Limch1Q3UH68 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Limch1Q3UH68 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Gm11355-201ENSMUST00000121120 306 ntBASIC19.29■□□□□ 0.68
Limch1Q3UH68 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.29■□□□□ 0.68
Limch1Q3UH68 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC19.29■□□□□ 0.68
Limch1Q3UH68 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.29■□□□□ 0.68
Limch1Q3UH68 Phf7-203ENSMUST00000226565 1971 ntBASIC19.29■□□□□ 0.68
Limch1Q3UH68 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Limch1Q3UH68 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Actl10-202ENSMUST00000226583 1501 ntBASIC19.28■□□□□ 0.68
Limch1Q3UH68 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Limch1Q3UH68 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Gm28033-201ENSMUST00000184224 96 ntBASIC19.27■□□□□ 0.68
Limch1Q3UH68 Gm17807-201ENSMUST00000186869 298 ntBASIC19.27■□□□□ 0.68
Limch1Q3UH68 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Limch1Q3UH68 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Limch1Q3UH68 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Limch1Q3UH68 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.27■□□□□ 0.67
Limch1Q3UH68 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Limch1Q3UH68 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Limch1Q3UH68 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms