Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.26■□□□□ 0.67
Rnf180Q3U827 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf180Q3U827 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.25■□□□□ 0.67
Rnf180Q3U827 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC19.25■□□□□ 0.67
Rnf180Q3U827 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm9682-201ENSMUST00000197505 556 ntBASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Gm44719-201ENSMUST00000206404 149 ntBASIC19.25■□□□□ 0.67
Rnf180Q3U827 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf180Q3U827 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Syt7-205ENSMUST00000224135 1557 ntBASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm37277-201ENSMUST00000194052 1111 ntBASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Thap2-203ENSMUST00000218989 527 ntBASIC19.24■□□□□ 0.67
Rnf180Q3U827 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 AC131710.1-201ENSMUST00000228336 990 ntBASIC19.24■□□□□ 0.67
Rnf180Q3U827 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Rnf180Q3U827 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm15163-201ENSMUST00000120749 1302 ntBASIC19.24■□□□□ 0.67
Rnf180Q3U827 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf180Q3U827 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.23■□□□□ 0.67
Rnf180Q3U827 BC021767-201ENSMUST00000126387 1716 ntBASIC19.23■□□□□ 0.67
Rnf180Q3U827 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Gm17837-201ENSMUST00000186435 985 ntBASIC19.23■□□□□ 0.67
Rnf180Q3U827 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf180Q3U827 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm4518-201ENSMUST00000182638 718 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm18057-201ENSMUST00000208220 503 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gm6018-201ENSMUST00000216090 1306 ntBASIC19.22■□□□□ 0.67
Rnf180Q3U827 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf180Q3U827 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms