Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 App-207ENSMUST00000227737 2827 ntBASIC17.07■□□□□ 0.32
Rnf40Q3U319 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.07■□□□□ 0.32
Rnf40Q3U319 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.07■□□□□ 0.32
Rnf40Q3U319 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.07■□□□□ 0.32
Rnf40Q3U319 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Rnf40Q3U319 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.06■□□□□ 0.32
Rnf40Q3U319 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Rnf40Q3U319 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Rnf40Q3U319 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Gm11643-201ENSMUST00000119578 864 ntBASIC17.05■□□□□ 0.32
Rnf40Q3U319 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Wnt10b-205ENSMUST00000226846 1204 ntBASIC17.05■□□□□ 0.32
Rnf40Q3U319 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Rnf40Q3U319 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.04■□□□□ 0.32
Rnf40Q3U319 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf40Q3U319 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf40Q3U319 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf40Q3U319 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf40Q3U319 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf40Q3U319 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms