Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Gm2651-201ENSMUST00000203560 838 ntBASIC14.16□□□□□ -0.14
Nkx3-1P97436 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Gm5867-201ENSMUST00000063197 592 ntBASIC14.16□□□□□ -0.14
Nkx3-1P97436 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Nkx3-1P97436 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm7862-201ENSMUST00000121461 292 ntBASIC14.15□□□□□ -0.14
Nkx3-1P97436 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm18206-201ENSMUST00000207027 926 ntBASIC14.15□□□□□ -0.14
Nkx3-1P97436 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm15442-201ENSMUST00000117905 1527 ntBASIC14.15□□□□□ -0.14
Nkx3-1P97436 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nkx3-1P97436 Gm43808-201ENSMUST00000202534 2065 ntBASIC14.14□□□□□ -0.15
Nkx3-1P97436 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Gm13830-205ENSMUST00000201195 1155 ntBASIC14.14□□□□□ -0.15
Nkx3-1P97436 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Gm15635-204ENSMUST00000208024 2539 ntBASIC14.14□□□□□ -0.15
Nkx3-1P97436 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nkx3-1P97436 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nkx3-1P97436 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms