Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Shmt1P50431 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shmt1P50431 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shmt1P50431 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shmt1P50431 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.33■□□□□ 0.37
Shmt1P50431 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.33■□□□□ 0.37
Shmt1P50431 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Shmt1P50431 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Shmt1P50431 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.33■□□□□ 0.36
Shmt1P50431 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.33■□□□□ 0.36
Shmt1P50431 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC17.33■□□□□ 0.36
Shmt1P50431 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Shmt1P50431 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.32■□□□□ 0.36
Shmt1P50431 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.32■□□□□ 0.36
Shmt1P50431 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Shmt1P50431 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Shmt1P50431 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.31■□□□□ 0.36
Shmt1P50431 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Shmt1P50431 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.31■□□□□ 0.36
Shmt1P50431 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Shmt1P50431 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Shmt1P50431 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.3■□□□□ 0.36
Shmt1P50431 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.3■□□□□ 0.36
Shmt1P50431 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.3■□□□□ 0.36
Shmt1P50431 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Shmt1P50431 Gm36967-201ENSMUST00000193814 266 ntBASIC17.3■□□□□ 0.36
Shmt1P50431 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.3■□□□□ 0.36
Shmt1P50431 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.3■□□□□ 0.36
Shmt1P50431 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Shmt1P50431 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.3■□□□□ 0.36
Shmt1P50431 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC17.3■□□□□ 0.36
Shmt1P50431 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Shmt1P50431 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Shmt1P50431 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.29■□□□□ 0.36
Shmt1P50431 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Shmt1P50431 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Shmt1P50431 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms