Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC19.67■□□□□ 0.74
Rfx1P48377 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rfx1P48377 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.66■□□□□ 0.74
Rfx1P48377 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Rfx1P48377 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Rfx1P48377 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.66■□□□□ 0.74
Rfx1P48377 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.66■□□□□ 0.74
Rfx1P48377 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Rfx1P48377 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Rfx1P48377 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.65■□□□□ 0.74
Rfx1P48377 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.65■□□□□ 0.74
Rfx1P48377 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.65■□□□□ 0.74
Rfx1P48377 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Rfx1P48377 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.65■□□□□ 0.74
Rfx1P48377 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Rfx1P48377 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Rfx1P48377 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Rfx1P48377 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Rfx1P48377 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Rfx1P48377 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Rfx1P48377 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Rfx1P48377 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Rfx1P48377 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
Rfx1P48377 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.64■□□□□ 0.73
Rfx1P48377 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.64■□□□□ 0.73
Rfx1P48377 Gm9731-201ENSMUST00000209480 747 ntBASIC19.64■□□□□ 0.73
Rfx1P48377 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.64■□□□□ 0.73
Rfx1P48377 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
Rfx1P48377 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC19.64■□□□□ 0.73
Rfx1P48377 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rfx1P48377 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
Rfx1P48377 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC19.63■□□□□ 0.73
Rfx1P48377 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Gm7638-201ENSMUST00000121348 967 ntBASIC19.63■□□□□ 0.73
Rfx1P48377 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.63■□□□□ 0.73
Rfx1P48377 Gm37856-201ENSMUST00000191634 999 ntBASIC19.63■□□□□ 0.73
Rfx1P48377 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Rfx1P48377 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rfx1P48377 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Rfx1P48377 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
Rfx1P48377 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Rfx1P48377 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Rfx1P48377 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.62■□□□□ 0.73
Rfx1P48377 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rfx1P48377 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms