Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm24752-201ENSMUST00000178240 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm24496-201ENSMUST00000178287 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm25649-201ENSMUST00000178476 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm25548-201ENSMUST00000178681 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm23147-201ENSMUST00000178841 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm26095-201ENSMUST00000179270 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm22171-201ENSMUST00000179283 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm23936-201ENSMUST00000179354 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm22619-201ENSMUST00000179516 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm25255-201ENSMUST00000179579 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm24755-201ENSMUST00000179691 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm26506-201ENSMUST00000179692 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm25086-201ENSMUST00000179931 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm23243-201ENSMUST00000180047 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm24659-201ENSMUST00000180212 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm24169-201ENSMUST00000180244 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm23689-201ENSMUST00000180354 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm27359-201ENSMUST00000184153 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm27785-201ENSMUST00000184268 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm27466-201ENSMUST00000184396 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Gm27703-201ENSMUST00000184836 110 ntBASIC21.83■■□□□ 1.09
Col18a1P39061 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Col18a1P39061 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col18a1P39061 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
Col18a1P39061 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col18a1P39061 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Col18a1P39061 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col18a1P39061 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Col18a1P39061 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col18a1P39061 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col18a1P39061 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC21.82■■□□□ 1.08
Col18a1P39061 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Col18a1P39061 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC21.82■■□□□ 1.08
Col18a1P39061 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Gm27301-201ENSMUST00000184012 127 ntBASIC21.82■■□□□ 1.08
Col18a1P39061 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col18a1P39061 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
Col18a1P39061 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC21.81■■□□□ 1.08
Col18a1P39061 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Gm18489-201ENSMUST00000172565 551 ntBASIC21.81■■□□□ 1.08
Col18a1P39061 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col18a1P39061 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC21.8■■□□□ 1.08
Col18a1P39061 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.8■■□□□ 1.08
Col18a1P39061 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
Col18a1P39061 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC21.8■■□□□ 1.08
Col18a1P39061 Gm15358-201ENSMUST00000119249 520 ntBASIC21.8■■□□□ 1.08
Col18a1P39061 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC21.8■■□□□ 1.08
Col18a1P39061 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC21.8■■□□□ 1.08
Col18a1P39061 Gm22175-201ENSMUST00000175007 78 ntBASIC21.8■■□□□ 1.08
Col18a1P39061 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Col18a1P39061 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Col18a1P39061 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col18a1P39061 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Col18a1P39061 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Col18a1P39061 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.79■■□□□ 1.08
Col18a1P39061 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC21.79■■□□□ 1.08
Col18a1P39061 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC21.79■■□□□ 1.08
Col18a1P39061 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC21.79■■□□□ 1.08
Col18a1P39061 Rpph1-201ENSMUST00000175096 319 ntBASIC21.79■■□□□ 1.08
Col18a1P39061 H2-Pa-201ENSMUST00000182803 626 ntBASIC21.79■■□□□ 1.08
Col18a1P39061 Thap2-203ENSMUST00000218989 527 ntBASIC21.79■■□□□ 1.08
Col18a1P39061 AC124732.2-201ENSMUST00000221977 316 ntBASIC21.79■■□□□ 1.08
Col18a1P39061 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col18a1P39061 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms