Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Idnk-204ENSMUST00000226010 1898 ntBASIC13.29□□□□□ -0.28
Cdx1P18111 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.29□□□□□ -0.28
Cdx1P18111 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Cdx1P18111 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Cdx1P18111 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC13.28□□□□□ -0.28
Cdx1P18111 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Gm44616-201ENSMUST00000206417 1732 ntBASIC13.28□□□□□ -0.28
Cdx1P18111 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Gm2399-201ENSMUST00000104944 225 ntBASIC13.28□□□□□ -0.28
Cdx1P18111 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Gm13158-201ENSMUST00000122007 736 ntBASIC13.28□□□□□ -0.28
Cdx1P18111 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 H2-K2-201ENSMUST00000174250 1049 ntBASIC13.28□□□□□ -0.28
Cdx1P18111 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Cdx1P18111 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdx1P18111 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.28□□□□□ -0.28
Cdx1P18111 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC13.28□□□□□ -0.28
Cdx1P18111 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
Cdx1P18111 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdx1P18111 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdx1P18111 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Gm715-201ENSMUST00000117865 831 ntBASIC13.27□□□□□ -0.29
Cdx1P18111 Gm13836-201ENSMUST00000121159 501 ntBASIC13.27□□□□□ -0.29
Cdx1P18111 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC13.27□□□□□ -0.29
Cdx1P18111 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Cdx1P18111 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Gm44544-201ENSMUST00000207052 1844 ntBASIC13.27□□□□□ -0.29
Cdx1P18111 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
Cdx1P18111 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
Cdx1P18111 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdx1P18111 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC13.26□□□□□ -0.29
Cdx1P18111 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC13.26□□□□□ -0.29
Cdx1P18111 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
Cdx1P18111 AC153881.1-201ENSMUST00000214448 284 ntBASIC13.26□□□□□ -0.29
Cdx1P18111 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Cdx1P18111 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdx1P18111 Gm43352-201ENSMUST00000196419 3065 ntBASIC13.26□□□□□ -0.29
Cdx1P18111 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms