Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
RaraP11416 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.76■□□□□ 0.43
RaraP11416 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC17.76■□□□□ 0.43
RaraP11416 Gm44450-201ENSMUST00000199528 114 ntBASIC17.76■□□□□ 0.43
RaraP11416 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.76■□□□□ 0.43
RaraP11416 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.76■□□□□ 0.43
RaraP11416 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RaraP11416 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RaraP11416 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.75■□□□□ 0.43
RaraP11416 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RaraP11416 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.75■□□□□ 0.43
RaraP11416 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RaraP11416 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Gm18115-201ENSMUST00000221209 621 ntBASIC17.75■□□□□ 0.43
RaraP11416 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.75■□□□□ 0.43
RaraP11416 Gm5417-201ENSMUST00000079706 384 ntBASIC17.75■□□□□ 0.43
RaraP11416 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RaraP11416 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.74■□□□□ 0.43
RaraP11416 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.74■□□□□ 0.43
RaraP11416 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.74■□□□□ 0.43
RaraP11416 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.74■□□□□ 0.43
RaraP11416 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RaraP11416 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RaraP11416 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
RaraP11416 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.74■□□□□ 0.43
RaraP11416 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.73■□□□□ 0.43
RaraP11416 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
RaraP11416 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.73■□□□□ 0.43
RaraP11416 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.73■□□□□ 0.43
RaraP11416 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.73■□□□□ 0.43
RaraP11416 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.73■□□□□ 0.43
RaraP11416 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
RaraP11416 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.73■□□□□ 0.43
RaraP11416 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RaraP11416 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RaraP11416 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
RaraP11416 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.72■□□□□ 0.43
RaraP11416 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
RaraP11416 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
RaraP11416 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.72■□□□□ 0.43
RaraP11416 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.72■□□□□ 0.43
RaraP11416 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.72■□□□□ 0.43
RaraP11416 Gm10566-201ENSMUST00000086739 996 ntBASIC17.72■□□□□ 0.43
RaraP11416 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
RaraP11416 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms