Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Gm22325-201ENSMUST00000158904 308 ntBASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Gm43060-201ENSMUST00000200621 289 ntBASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim55G3X8Y1 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim55G3X8Y1 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Trim55G3X8Y1 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Smad6-203ENSMUST00000179458 273 ntBASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trim55G3X8Y1 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms