Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA1P55317 RPS3AP43-201ENST00000479743 781 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC023050.1-201ENST00000498198 304 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 MTCO1P31-201ENST00000506355 492 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC023141.12-201ENST00000512399 199 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC009812.2-201ENST00000517657 457 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.8□□□□□ -1.96
FOXA1P55317 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXA1P55317 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 AL161713.1-201ENST00000555538 145 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC006270.2-201ENST00000578523 652 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC006116.7-201ENST00000590141 756 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC2.8□□□□□ -1.96
FOXA1P55317 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC124312.4-201ENST00000605533 310 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC242628.1-201ENST00000606810 391 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AL355816.1-201ENST00000607951 118 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC090115.4-201ENST00000609970 188 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC107871.2-201ENST00000612894 502 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AP004607.9-201ENST00000618202 316 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 MIR4278-201ENST00000636094 69 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC138649.5-201ENST00000637456 137 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC093908.1-201ENST00000623125 8092 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA1P55317 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA1P55317 SNORA71.1-201ENST00000364523 117 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
FOXA1P55317 RNU6-40P-201ENST00000384254 107 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 RNU6-452P-201ENST00000384406 107 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 MIR483-201ENST00000385070 76 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA1P55317 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA1P55317 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA1P55317 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA1P55317 AL590623.1-201ENST00000427864 105 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA1P55317 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA1P55317 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA1P55317 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA1P55317 MTND3P4-201ENST00000453537 303 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 OR2A20P-203ENST00000498397 1268 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 PTGES3P3-201ENST00000511479 482 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.79□□□□□ -1.96
FOXA1P55317 SNORA70.24-201ENST00000517233 118 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA1P55317 FAM60DP-201ENST00000524174 632 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.79□□□□□ -1.96
FOXA1P55317 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA1P55317 AC010680.4-201ENST00000605334 543 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA1P55317 CR589904.2-201ENST00000612533 440 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 MIR7973-1-201ENST00000614683 76 ntBASIC2.79□□□□□ -1.96
FOXA1P55317 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC2.79□□□□□ -1.96
FOXA1P55317 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA1P55317 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.79□□□□□ -1.96
FOXA1P55317 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA1P55317 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
FOXA1P55317 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
FOXA1P55317 RNA5SP374-201ENST00000362939 125 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 RNU6-317P-201ENST00000384031 107 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 MIR124-3-201ENST00000384866 87 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 MIR512-1-201ENST00000384913 84 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 SNORA48.8-201ENST00000391324 134 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.78□□□□□ -1.96
FOXA1P55317 AC010385.1-201ENST00000412374 256 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 RPL34P26-201ENST00000445636 354 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 AC068724.1-201ENST00000487100 792 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL358832.1-201ENST00000497800 389 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA1P55317 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 SNORA74D-201ENST00000516404 141 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA1P55317 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
FOXA1P55317 AP000857.1-201ENST00000532151 543 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC2.78□□□□□ -1.96
FOXA1P55317 NOP56P3-201ENST00000549457 385 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC2.78□□□□□ -1.96
FOXA1P55317 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC2.78□□□□□ -1.96
FOXA1P55317 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.78□□□□□ -1.96
FOXA1P55317 AP003117.1-201ENST00000602771 554 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 BNIP3P11-201ENST00000603878 563 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 YPEL5P2-201ENST00000605553 359 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AC005156.1-201ENST00000613371 573 ntBASIC2.78□□□□□ -1.96
FOXA1P55317 AL442067.2-201ENST00000614033 363 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms