Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PRELID3BP8-201ENST00000604148 295 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 RPL23AP88-201ENST00000605759 454 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 VIS1.1-201ENST00000610517 203 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AC083809.1-201ENST00000615051 472 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA3P55318 AC006249.1-201ENST00000621223 471 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AP003122.6-201ENST00000623831 495 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 AP003122.5-201ENST00000527668 3766 ntBASIC2.25□□□□□ -2.05
FOXA3P55318 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA3P55318 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 ZNF285B-201ENST00000561698 1767 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA3P55318 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA3P55318 MIR141-201ENST00000384975 95 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA3P55318 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC234782.4-201ENST00000417646 1048 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 MTCYBP24-201ENST00000420387 1106 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 DYNLL1P6-201ENST00000503440 264 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC021146.7-201ENST00000509604 775 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 MTCYBP37-201ENST00000510642 1133 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 IGKV2-36-201ENST00000519999 223 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AP004371.1-201ENST00000525240 214 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA3P55318 ELOCP31-201ENST00000540463 467 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 AP003717.3-201ENST00000544832 1180 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AC125611.2-201ENST00000551907 647 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA3P55318 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 AC005021.1-201ENST00000608730 355 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA3P55318 MIR378J-201ENST00000611988 109 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AL121772.2-201ENST00000614331 297 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AC009464.1-201ENST00000615731 469 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC2.24□□□□□ -2.05
FOXA3P55318 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA3P55318 AC090897.3-201ENST00000636973 1157 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 AC009093.8-201ENST00000641769 292 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 Z82195.2-201ENST00000612348 18351 ntBASIC2.24□□□□□ -2.05
FOXA3P55318 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA3P55318 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA3P55318 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
FOXA3P55318 RNU1-35P-201ENST00000362782 153 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA3P55318 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA3P55318 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC2.23□□□□□ -2.05
FOXA3P55318 RNU1-109P-201ENST00000383960 147 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 SNORD15B-201ENST00000384714 146 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AL357075.1-201ENST00000404107 726 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA3P55318 RAP1BP1-201ENST00000412709 553 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC023128.2-201ENST00000420880 1223 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA3P55318 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 RPL21P23-201ENST00000446654 460 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA3P55318 AC008571.1-201ENST00000467232 300 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC020898.1-201ENST00000474167 787 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC106707.2-201ENST00000484182 374 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA3P55318 RNU1-95P-201ENST00000516357 160 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 RNU1-128P-201ENST00000516704 160 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 RNU6-826P-201ENST00000516827 104 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 TRMT10BP1-201ENST00000519377 943 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.23□□□□□ -2.05
FOXA3P55318 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA3P55318 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA3P55318 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA3P55318 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.23□□□□□ -2.05
FOXA3P55318 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.23□□□□□ -2.05
FOXA3P55318 U73479.1-201ENST00000618062 168 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC007318.2-201ENST00000620999 243 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC006111.3-201ENST00000622137 383 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 AC244258.1-201ENST00000637553 1071 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
FOXA3P55318 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
FOXA3P55318 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 SAGE4P-201ENST00000442271 3381 ntBASIC2.23□□□□□ -2.05
FOXA3P55318 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.23□□□□□ -2.05
FOXA3P55318 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.23□□□□□ -2.05
FOXA3P55318 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms