Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RPS20P32-201ENST00000456044 356 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL21P10-201ENST00000463521 490 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RN7SL807P-201ENST00000470923 297 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AP000563.1-201ENST00000490865 758 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL5P23-201ENST00000496040 868 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 MTCO3P15-201ENST00000526563 574 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC135001.1-201ENST00000544546 283 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC107016.1-201ENST00000550463 337 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC011611.1-201ENST00000552179 197 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF415P1-201ENST00000582279 1166 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AL391001.1-201ENST00000602747 715 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 GAS5-AS1-201ENST00000602767 694 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC018754.1-201ENST00000607486 925 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AL513477.2-201ENST00000607858 568 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC016597.2-201ENST00000613256 341 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC087821.2-201ENST00000637086 450 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 MFSD8-236ENST00000641509 4050 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF734P-201ENST00000419494 1534 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL359893.1-201ENST00000447628 1580 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNU6-374P-201ENST00000364146 108 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNA5SP167-201ENST00000365461 116 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 MIR122-201ENST00000385044 85 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNU6-298P-201ENST00000390888 96 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 Y_RNA.578-201ENST00000390903 88 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 EIF5P1-201ENST00000400019 1231 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL133264.1-201ENST00000407157 562 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNA5SP306-201ENST00000411087 107 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 ATP5JP1-201ENST00000431631 322 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 HMGN2P21-201ENST00000447764 270 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC010307.1-201ENST00000467206 836 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 DYNLL1P6-201ENST00000503440 264 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 SNORA70.18-201ENST00000516696 98 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 SCARNA1-201ENST00000517138 166 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TRAV15-201ENST00000556680 249 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL592148.2-201ENST00000612210 372 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP003355.3-201ENST00000623465 114 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP003485.1-201ENST00000625093 753 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC138649.5-201ENST00000637456 137 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 BDP1P-201ENST00000582658 1990 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MT-TC-201ENST00000387405 66 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 JKAMPP1-201ENST00000413804 919 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 FCF1P2-201ENST00000415284 583 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MTND4P3-201ENST00000417829 541 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC092393.1-201ENST00000439625 742 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 AL645638.1-201ENST00000440519 361 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 MTCYBP42-201ENST00000444653 1130 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 DNAJC19P1-201ENST00000455312 319 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 RPL6P9-201ENST00000466502 859 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC078817.1-201ENST00000492623 435 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 SETP14-201ENST00000497538 873 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms