Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RPS20P32-201ENST00000456044 356 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL21P10-201ENST00000463521 490 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RN7SL807P-201ENST00000470923 297 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AP000563.1-201ENST00000490865 758 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL5P23-201ENST00000496040 868 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 MTCO3P15-201ENST00000526563 574 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC135001.1-201ENST00000544546 283 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC107016.1-201ENST00000550463 337 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC011611.1-201ENST00000552179 197 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF415P1-201ENST00000582279 1166 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AL391001.1-201ENST00000602747 715 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 GAS5-AS1-201ENST00000602767 694 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC018754.1-201ENST00000607486 925 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AL513477.2-201ENST00000607858 568 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC016597.2-201ENST00000613256 341 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 AC087821.2-201ENST00000637086 450 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 MFSD8-236ENST00000641509 4050 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF734P-201ENST00000419494 1534 ntBASIC3.65□□□□□ -1.83
TNFRSF4P43489 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
TNFRSF4P43489 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL359893.1-201ENST00000447628 1580 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNU6-374P-201ENST00000364146 108 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNA5SP167-201ENST00000365461 116 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 MIR122-201ENST00000385044 85 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNU6-298P-201ENST00000390888 96 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 Y_RNA.578-201ENST00000390903 88 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 EIF5P1-201ENST00000400019 1231 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL133264.1-201ENST00000407157 562 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 RNA5SP306-201ENST00000411087 107 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 ATP5JP1-201ENST00000431631 322 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 HMGN2P21-201ENST00000447764 270 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC010307.1-201ENST00000467206 836 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 DYNLL1P6-201ENST00000503440 264 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 SNORA70.18-201ENST00000516696 98 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 SCARNA1-201ENST00000517138 166 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TRAV15-201ENST00000556680 249 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AL592148.2-201ENST00000612210 372 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP003355.3-201ENST00000623465 114 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 AP003485.1-201ENST00000625093 753 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 AC138649.5-201ENST00000637456 137 ntBASIC3.64□□□□□ -1.83
TNFRSF4P43489 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.64□□□□□ -1.83
TNFRSF4P43489 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
TNFRSF4P43489 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 BDP1P-201ENST00000582658 1990 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MT-TC-201ENST00000387405 66 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 JKAMPP1-201ENST00000413804 919 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 FCF1P2-201ENST00000415284 583 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 MTND4P3-201ENST00000417829 541 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC092393.1-201ENST00000439625 742 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 AL645638.1-201ENST00000440519 361 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 MTCYBP42-201ENST00000444653 1130 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 DNAJC19P1-201ENST00000455312 319 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.63□□□□□ -1.83
TNFRSF4P43489 RPL6P9-201ENST00000466502 859 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 AC078817.1-201ENST00000492623 435 ntBASIC3.63□□□□□ -1.83
TNFRSF4P43489 SETP14-201ENST00000497538 873 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms