Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL18AP17-201ENST00000455326 198 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RN7SL98P-201ENST00000462271 300 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RPS3AP22-201ENST00000488297 769 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 RN7SL691P-201ENST00000494487 301 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC104057.1-201ENST00000515547 497 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 RN7SKP82-201ENST00000516786 223 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 ELOCP32-201ENST00000548625 324 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 TVP23BP1-201ENST00000557500 617 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 MIR4458-201ENST00000578872 75 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 VN1R90P-201ENST00000595717 726 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC010680.3-201ENST00000604215 520 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 DPRXP5-201ENST00000604662 539 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL451044.1-201ENST00000604867 238 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL133507.1-201ENST00000605269 557 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC018638.7-201ENST00000605836 1114 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AL360219.1-201ENST00000610230 366 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC008083.4-201ENST00000615076 444 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC114781.5-201ENST00000615297 108 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC068057.2-201ENST00000624047 895 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC004943.3-201ENST00000624116 600 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 OR52H1-202ENST00000641796 1061 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC006504.1-201ENST00000562493 3666 ntBASIC3.55□□□□□ -1.84
NKX3-1Q99801 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
NKX3-1Q99801 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
NKX3-1Q99801 AC005539.1-201ENST00000443768 1479 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 MTND4P34-201ENST00000572715 1371 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 EIF2AP4-201ENST00000424793 1781 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 XIAPP3-201ENST00000312918 795 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 OR5H2-201ENST00000355273 945 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 SNORD35B-201ENST00000363660 87 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 RNU6-1200P-201ENST00000384162 107 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 OR6C69P-201ENST00000394268 893 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 TIMM9P2-201ENST00000419324 266 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC008065.1-201ENST00000428525 348 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 UBE2D3P1-201ENST00000436669 444 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 RPL7P28-201ENST00000437739 740 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 RPL23AP16-201ENST00000441715 421 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL606662.1-201ENST00000445763 553 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 RAD23BP3-201ENST00000454157 1152 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL109741.2-201ENST00000455561 343 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC010618.1-201ENST00000469924 477 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL592156.1-201ENST00000508758 304 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 MRPS33P3-201ENST00000513456 322 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 RN7SKP122-201ENST00000515923 296 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC105185.1-201ENST00000518705 535 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC092851.1-201ENST00000535964 478 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 TOMM20P2-201ENST00000540082 421 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL512347.1-201ENST00000566420 503 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC005412.1-201ENST00000580812 1049 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC006539.2-201ENST00000601729 572 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL592221.1-201ENST00000605266 382 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC010680.4-201ENST00000605334 543 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC006270.3-201ENST00000605967 1036 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC005962.2-201ENST00000611427 652 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AC068722.2-201ENST00000618734 544 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.54□□□□□ -1.84
NKX3-1Q99801 FAM35DP-201ENST00000323387 2712 ntBASIC3.54□□□□□ -1.84
NKX3-1Q99801 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms