Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RNU6-1243P-201ENST00000364028 107 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RNA5SP189-201ENST00000364920 115 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RNU1-44P-201ENST00000384453 163 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 MIR649-201ENST00000384843 97 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RNU1-82P-201ENST00000390851 165 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL355379.1-201ENST00000405542 640 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RN7SKP167-201ENST00000411047 285 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 SNORA74C-2-201ENST00000411179 201 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC068533.2-201ENST00000411872 306 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RAC1P3-201ENST00000416129 580 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC096632.1-201ENST00000427395 310 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 USP9YP11-201ENST00000427537 717 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RPL31P54-201ENST00000429803 370 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 UBE2V1P1-201ENST00000430836 445 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 MTND1P32-201ENST00000433043 938 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 B3GNT2P1-201ENST00000434960 952 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RPS25P9-201ENST00000435591 252 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC241584.1-201ENST00000438469 1241 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL008629.1-201ENST00000438615 184 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RPS3AP12-201ENST00000443616 753 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC010733.1-201ENST00000451515 401 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RN7SL303P-201ENST00000469773 251 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC092451.1-201ENST00000480211 153 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RPL36AP41-201ENST00000493820 306 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC104164.2-201ENST00000496953 495 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC078918.1-201ENST00000498515 228 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC093281.2-201ENST00000510153 597 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC005921.1-201ENST00000510589 286 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 PPBPP1-201ENST00000510807 373 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AP000926.4-201ENST00000527351 454 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 ELOCP32-201ENST00000548625 324 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL512347.1-201ENST00000566420 503 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 OR4K7P-201ENST00000580232 945 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC069061.3-201ENST00000582254 823 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 VN1R92P-201ENST00000598511 928 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 IPO5P1-202ENST00000600039 287 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC009220.3-201ENST00000604318 586 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL133507.1-201ENST00000605269 557 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC006270.3-201ENST00000605967 1036 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AP001521.1-201ENST00000609150 300 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC114781.5-201ENST00000615297 108 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AL138721.1-201ENST00000616756 179 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 RMST_9.1-201ENST00000619945 193 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AC022079.1-201ENST00000621546 602 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AP000676.3-201ENST00000623299 569 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 CU459211.1-201ENST00000635667 749 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 EXOC5P1-201ENST00000510543 1969 ntBASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.68□□□□□ -1.82
PDLIM3Q53GG5 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CDR1-202ENST00000625883 1485 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms