Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-1293P-201ENST00000384077 107 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-636P-201ENST00000384598 107 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RN7SKP156-201ENST00000410308 342 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPS3AP9-201ENST00000417027 792 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPL22P18-201ENST00000417197 377 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPL7P44-201ENST00000424827 742 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC010881.1-201ENST00000433830 235 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPS20P21-201ENST00000466859 343 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPL7L1P8-201ENST00000469911 741 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC011979.1-201ENST00000472300 483 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 MTCO3P35-201ENST00000485582 781 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC090071.1-201ENST00000507713 644 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 OR5H4P-201ENST00000510851 923 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-202P-201ENST00000515998 96 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNA5SP179-201ENST00000517284 121 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC090281.1-201ENST00000523019 276 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 MTCO2P15-201ENST00000532655 656 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 MTND4P33-201ENST00000556706 766 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC093519.1-201ENST00000566109 298 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL158211.1-201ENST00000566763 763 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC015726.1-201ENST00000602353 681 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC091167.4-201ENST00000605079 184 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL354760.1-201ENST00000608357 643 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC004825.2-201ENST00000616634 455 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-156P-201ENST00000621869 107 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC106871.1-201ENST00000568324 3102 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AL161912.2-201ENST00000565707 3007 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC090229.1-201ENST00000590983 1609 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 RNU6-1300P-201ENST00000391046 108 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 RAB9AP3-201ENST00000412737 573 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 OR2X1P-201ENST00000421144 687 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL050321.1-201ENST00000432363 400 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC092393.1-201ENST00000439625 742 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC069285.2-201ENST00000440210 275 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 RAB9AP1-201ENST00000449393 573 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC005410.1-202ENST00000460347 485 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 S100A11P1-201ENST00000477525 312 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 PPIAP15-201ENST00000479662 484 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 RPS6P4-201ENST00000494693 758 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 MTATP6P22-201ENST00000507369 598 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC110792.2-201ENST00000510278 224 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 MTCYBP27-201ENST00000555160 670 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC074051.3-201ENST00000570238 358 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC022662.1-201ENST00000580252 331 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 MIR3944-201ENST00000581277 108 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AP001269.3-201ENST00000588718 329 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC104662.1-201ENST00000604448 511 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms