Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU6-263P-201ENST00000363811 107 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC108032.1-201ENST00000416706 207 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AL356320.2-201ENST00000417263 507 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 FNDC3CP-201ENST00000420795 1155 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AL513175.2-201ENST00000422071 443 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 MTND2P9-201ENST00000422293 931 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC127537.2-201ENST00000439258 465 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 VN1R10P-201ENST00000447106 875 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 NUTF2P7-201ENST00000453086 375 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC133473.1-201ENST00000455173 299 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 SNRPGP5-201ENST00000456003 220 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC005410.1-202ENST00000460347 485 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 RPS7P7-201ENST00000463499 571 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 PLGLA-201ENST00000465668 449 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC108078.3-201ENST00000502633 489 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC005832.3-201ENST00000537929 631 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC135001.1-201ENST00000544546 283 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC022655.2-201ENST00000577280 318 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC006270.2-201ENST00000578523 652 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC010928.3-201ENST00000587712 541 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC068790.5-201ENST00000602741 355 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AC078899.5-201ENST00000612475 178 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 MIR492-201ENST00000638676 116 ntBASIC4.29□□□□□ -1.72
VPS28Q9UK41 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS28Q9UK41 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS28Q9UK41 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 RNA5SP388-201ENST00000362584 119 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 RNU6-216P-201ENST00000363282 104 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 RNU6-906P-201ENST00000384700 70 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL603766.1-201ENST00000407763 664 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL590084.1-201ENST00000407885 387 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 JKAMPP1-201ENST00000413804 919 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 EI24P1-201ENST00000416584 867 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 MTCO2P25-201ENST00000447065 681 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL121877.1-201ENST00000453704 622 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS28Q9UK41 RNA5SP246-201ENST00000458909 119 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 RPL23AP2-201ENST00000471227 466 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 OR4G11P-201ENST00000492842 939 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC023141.12-201ENST00000512399 199 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 RN7SKP31-201ENST00000516354 278 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 MIR2116-201ENST00000517221 80 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 RN7SL600P-201ENST00000581811 299 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC124312.4-201ENST00000605533 310 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 AC027449.1-201ENST00000608890 407 ntBASIC4.28□□□□□ -1.72
VPS28Q9UK41 ZYXP1-201ENST00000617638 118 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms