Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AC027667.1-201ENST00000545814 304 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 APAF1-207ENST00000547743 651 ntTSL 3 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 MIR5692C1-201ENST00000585309 91 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AC008521.1-201ENST00000587471 187 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AL683813.2-201ENST00000605245 502 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 ATP1B3P1-201ENST00000605365 821 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 DLEU2_5.1-201ENST00000615567 84 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AP000866.6-201ENST00000638898 3579 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AC093775.1-201ENST00000624154 1868 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 AC105114.1-201ENST00000624795 1862 ntBASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
LIMD1Q9UGP4 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 IQCB2P-201ENST00000401788 1633 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC119674.1-204ENST00000641348 1343 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.153-201ENST00000363615 91 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.489-201ENST00000384410 101 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 BX510359.3-201ENST00000422168 306 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 RPL36AP39-201ENST00000445859 318 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC239809.1-201ENST00000450470 217 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 GSTA11P-201ENST00000452866 669 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL583843.1-201ENST00000456070 346 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC004453.1-201ENST00000487895 408 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC026801.1-201ENST00000497178 464 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC026782.1-201ENST00000512952 449 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 RNU6-27P-201ENST00000516146 107 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.667-201ENST00000516212 107 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 IL7-206ENST00000520269 456 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 DEFB108D-201ENST00000527787 222 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 HMGN2P47-201ENST00000559378 272 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 SNORD95-201ENST00000579879 68 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL355812.1-201ENST00000603215 216 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL591167.1-201ENST00000607321 456 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL512652.1-201ENST00000619006 500 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AC091925.2-201ENST00000625059 256 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 AL049767.1-202ENST00000637826 242 ntBASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
LIMD1Q9UGP4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC083806.2-201ENST00000617795 2685 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AP000756.2-201ENST00000624168 2567 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SNORD16-201ENST00000362803 99 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RNU6-379P-201ENST00000363813 104 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RN7SKP292-201ENST00000365522 317 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RNU6-434P-201ENST00000384376 107 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SNORD70.1-201ENST00000391007 85 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.594-201ENST00000410373 140 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 FAR2P4-202ENST00000425399 584 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC023141.9-201ENST00000458734 412 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC006499.3-201ENST00000506077 748 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 HIGD1AP14-201ENST00000507617 282 ntBASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms