Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 MIR34A-201ENST00000385130 110 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 PRELID3BP7-201ENST00000503606 469 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AC009097.3-201ENST00000563557 1018 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 OR6R2P-201ENST00000609216 300 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 AC073476.4-201ENST00000628409 72 ntBASIC4.48□□□□□ -1.69
SCAPERQ9BY12 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
SCAPERQ9BY12 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 RPL23AP14-201ENST00000468281 468 ntBASIC4.47□□□□□ -1.69
SCAPERQ9BY12 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.47□□□□□ -1.69
SCAPERQ9BY12 AC008725.1-201ENST00000605123 2263 ntBASIC4.47□□□□□ -1.69
SCAPERQ9BY12 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SCAPERQ9BY12 OR56A5-201ENST00000340110 738 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 BMS1P22-201ENST00000414726 313 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 GLRXP1-201ENST00000423261 334 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 RPS12P18-201ENST00000442381 270 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC112653.1-201ENST00000443851 386 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AL513124.1-201ENST00000450410 614 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC010401.1-201ENST00000463867 348 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC068305.1-201ENST00000497406 726 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 RNU6-237P-201ENST00000515985 71 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC011602.1-201ENST00000546484 331 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC015871.2-201ENST00000603605 948 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC004832.5-201ENST00000608677 401 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 AC006840.1-201ENST00000623069 542 ntBASIC4.46□□□□□ -1.69
SCAPERQ9BY12 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
SCAPERQ9BY12 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC092435.3-201ENST00000565538 3654 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AL356057.1-202ENST00000402263 756 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 MRPL50P2-201ENST00000416821 482 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 NPM1P11-201ENST00000417106 855 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC007563.3-201ENST00000433233 371 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC010468.1-201ENST00000461022 817 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 RPL31P13-201ENST00000484151 370 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC096947.1-201ENST00000603233 470 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 AC007318.2-201ENST00000620999 243 ntBASIC4.46□□□□□ -1.7
SCAPERQ9BY12 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SCAPERQ9BY12 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 RSL24D1P4-201ENST00000400938 484 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 BTG3P1-201ENST00000435859 716 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 RAB28P3-201ENST00000448325 597 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 RPS3P1-201ENST00000456781 192 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 RNU1-143P-201ENST00000516296 146 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AC107918.3-201ENST00000533272 382 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 AC007566.2-201ENST00000603642 413 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 U1.23-201ENST00000610293 146 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 RNU1-68P-201ENST00000615382 146 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 U1.39-201ENST00000621562 146 ntBASIC4.45□□□□□ -1.7
SCAPERQ9BY12 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.45□□□□□ -1.7
SCAPERQ9BY12 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCAPERQ9BY12 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SCAPERQ9BY12 RNA5SP508-201ENST00000411327 119 ntBASIC4.44□□□□□ -1.7
SCAPERQ9BY12 BX679664.1-201ENST00000434429 253 ntBASIC4.44□□□□□ -1.7
SCAPERQ9BY12 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.44□□□□□ -1.7
SCAPERQ9BY12 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.44□□□□□ -1.7
SCAPERQ9BY12 RNU7-170P-201ENST00000459303 61 ntBASIC4.44□□□□□ -1.7
SCAPERQ9BY12 RN7SL20P-201ENST00000488827 297 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms