Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC138473.1-201ENST00000605717 526 ntBASIC3.75□□□□□ -1.81
BRCA1P38398 AC009318.3-201ENST00000616916 503 ntBASIC3.75□□□□□ -1.81
BRCA1P38398 AL356274.1-201ENST00000617064 410 ntBASIC3.75□□□□□ -1.81
BRCA1P38398 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
BRCA1P38398 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.75□□□□□ -1.81
BRCA1P38398 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
BRCA1P38398 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
BRCA1P38398 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.74□□□□□ -1.81
BRCA1P38398 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.74□□□□□ -1.81
BRCA1P38398 AP000936.3-201ENST00000438127 255 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC010095.1-201ENST00000443543 144 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.74□□□□□ -1.81
BRCA1P38398 RPL31P20-201ENST00000449593 360 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC104629.2-201ENST00000468627 598 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 SEPT7P6-201ENST00000469999 1143 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 NARSP2-201ENST00000518524 679 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC079600.2-201ENST00000550076 130 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 VN1R78P-201ENST00000597393 564 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 PSMA6P4-201ENST00000603247 718 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC123786.2-201ENST00000603459 275 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 Z82195.1-201ENST00000604558 398 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 AC131238.1-201ENST00000617135 328 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
BRCA1P38398 AC007336.1-201ENST00000576365 3828 ntBASIC3.74□□□□□ -1.81
BRCA1P38398 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
BRCA1P38398 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 RPL7P25-201ENST00000404151 721 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC087499.2-201ENST00000432861 149 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 FTH1P1-201ENST00000437933 532 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC009263.1-201ENST00000441193 1239 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AL121877.1-201ENST00000453704 622 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC107934.2-201ENST00000518653 310 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC018552.3-201ENST00000567416 561 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 ASNSP3-201ENST00000451989 1306 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 AL031985.3-201ENST00000565390 2449 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC010329.2-201ENST00000595195 2737 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC069540.1-201ENST00000446320 988 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 CALM1P2-201ENST00000452941 448 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 RN7SL93P-201ENST00000463035 293 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 MTCO3P42-201ENST00000509488 518 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.73□□□□□ -1.81
BRCA1P38398 MTCO3P39-201ENST00000514812 518 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 RNU4-29P-201ENST00000515943 174 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.73□□□□□ -1.81
BRCA1P38398 AC090953.1-201ENST00000604305 1092 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC007423.1-201ENST00000605009 627 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 AC119674.1-220ENST00000641502 1048 ntBASIC3.73□□□□□ -1.81
BRCA1P38398 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
BRCA1P38398 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.73□□□□□ -1.81
BRCA1P38398 MAPK10-362ENST00000641864 4484 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AC007496.3-201ENST00000624987 3443 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
BRCA1P38398 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
BRCA1P38398 RNU1-89P-201ENST00000384592 164 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 ZNF736P10Y-201ENST00000403990 1110 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 RNU2-52P-201ENST00000410680 190 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.72□□□□□ -1.81
BRCA1P38398 AL513174.1-201ENST00000423182 629 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 AL392003.1-201ENST00000434394 243 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 MRPS31P2-201ENST00000451581 518 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.72□□□□□ -1.81
BRCA1P38398 AL136097.1-201ENST00000456945 913 ntBASIC3.72□□□□□ -1.81
BRCA1P38398 SNORD109B-201ENST00000458961 67 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms