Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RNU6-543P-201ENST00000362576 108 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AL034374.1-201ENST00000406329 351 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RN7SKP125-201ENST00000410481 302 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RNA5SP296-201ENST00000410523 111 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AL353193.1-201ENST00000421444 268 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AL353678.1-201ENST00000422735 741 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 GTF2IP20-201ENST00000431663 360 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 COX6CP18-201ENST00000448769 222 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 DHFRP3-201ENST00000455595 559 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC023141.9-201ENST00000458734 412 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RPL7P19-201ENST00000469948 618 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 ACTR3P3-201ENST00000480448 893 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RN7SL547P-201ENST00000490793 290 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC108120.2-201ENST00000512973 294 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AP000859.1-201ENST00000525536 307 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 BRD9P1-201ENST00000529855 560 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC136618.2-201ENST00000575091 400 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC100830.2-201ENST00000581636 240 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC012507.3-201ENST00000603556 477 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC112191.3-201ENST00000604371 277 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC018695.5-201ENST00000605872 315 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC019193.3-201ENST00000609144 554 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC006840.1-201ENST00000623069 542 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AP001350.1-201ENST00000601906 1524 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 AC023421.1-201ENST00000590535 1785 ntBASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC39Q9UFE4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 AC021242.1-201ENST00000507315 2035 ntBASIC5.96□□□□□ -1.45
CCDC39Q9UFE4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 OR52B1P-201ENST00000316506 909 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RNU6-723P-201ENST00000383973 107 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 SNORA51.12-201ENST00000384448 134 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MIR105-1-201ENST00000385222 81 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RNU1-77P-201ENST00000390868 162 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 BX890604.2-201ENST00000427883 474 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 CYCSP6-201ENST00000434498 302 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RPL37P21-201ENST00000435890 276 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 CYCSP12-201ENST00000437729 300 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RPS26P30-201ENST00000443431 335 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC079448.1-201ENST00000449377 373 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL133445.1-201ENST00000467051 452 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RN7SL814P-201ENST00000487715 300 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RPL7P38-201ENST00000488396 739 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC007182.2-201ENST00000489251 402 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RPL7P51-201ENST00000490532 749 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC108078.3-201ENST00000502633 489 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC017037.2-201ENST00000513850 890 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 EIF4A2P5-201ENST00000529914 499 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AP003034.1-201ENST00000534621 422 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 DNAJC8P1-201ENST00000554535 372 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MIR4675-201ENST00000577898 77 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL512605.2-201ENST00000592972 256 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 SNRPGP17-201ENST00000603780 214 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL391646.1-201ENST00000603860 190 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC007621.1-201ENST00000604544 437 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AL162431.4-201ENST00000604674 411 ntBASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms