Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AGGF1P5-201ENST00000567900 919 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 MTND3P13-201ENST00000574391 343 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC012417.1-201ENST00000582307 1039 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC008739.3-201ENST00000603262 127 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC107081.3-201ENST00000612715 2034 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC023158.2-201ENST00000614876 543 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC006963.1-201ENST00000624003 1052 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC012442.3-202ENST00000636742 206 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 AC025125.1-201ENST00000624743 1922 ntBASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC3Q9BQI4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
CCDC3Q9BQI4 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 SNORA71.3-201ENST00000362582 128 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 RNU4-28P-201ENST00000364739 141 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 SSR1P2-201ENST00000415208 787 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC007435.1-201ENST00000421086 415 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 DPRXP1-201ENST00000426312 460 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC105402.2-201ENST00000438503 358 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 CR769776.1-201ENST00000441254 787 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 RPL7P59-201ENST00000447700 943 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC104306.1-201ENST00000449702 371 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC079776.3-201ENST00000450665 370 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 RPS15AP1-201ENST00000457423 391 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 snoU13.22-201ENST00000459428 104 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 DYNLL1P6-201ENST00000503440 264 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC017037.1-201ENST00000508460 471 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC005351.1-201ENST00000511152 786 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 ARL2BPP5-201ENST00000523141 481 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 OR5M7P-201ENST00000526140 972 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC069304.3-201ENST00000603938 1084 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL390816.3-201ENST00000604527 1066 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC114878.2-201ENST00000604863 1251 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 MIR432-201ENST00000606207 94 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC009974.1-201ENST00000608881 455 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL031666.3-201ENST00000609320 1006 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC064801.1-201ENST00000612025 407 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AL512506.2-201ENST00000624472 458 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 ZNF663P-202ENST00000641770 1131 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC011266.1-201ENST00000624119 3569 ntBASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC3Q9BQI4 MTND5P31-201ENST00000419366 1374 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 RNA5SP124-201ENST00000362739 110 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 SUGT1P1-201ENST00000379514 476 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 MIR30B-201ENST00000384850 88 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 RNU2-21P-201ENST00000410368 188 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 RNA5SP44-201ENST00000410446 133 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 IFNNP1-201ENST00000429219 553 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 UBE2V1P1-201ENST00000430836 445 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 HLA-N-201ENST00000437516 135 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC241584.1-201ENST00000438469 1241 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 NOTCH2P1-201ENST00000443481 624 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC007327.1-201ENST00000447461 264 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms