Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC010857.1-201ENST00000606398 594 ntBASIC5.17□□□□□ -1.58
NUP88Q99567 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.17□□□□□ -1.58
NUP88Q99567 AC140113.4-201ENST00000622087 222 ntBASIC5.17□□□□□ -1.58
NUP88Q99567 PCMTD1P7-201ENST00000634506 357 ntBASIC5.17□□□□□ -1.58
NUP88Q99567 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
NUP88Q99567 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
NUP88Q99567 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.17□□□□□ -1.58
NUP88Q99567 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.17□□□□□ -1.58
NUP88Q99567 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP88Q99567 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP88Q99567 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.17□□□□□ -1.58
NUP88Q99567 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
NUP88Q99567 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.16□□□□□ -1.58
NUP88Q99567 ERCC6-202ENST00000374127 1782 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
NUP88Q99567 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.16□□□□□ -1.58
NUP88Q99567 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
NUP88Q99567 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 RNU6-374P-201ENST00000364146 108 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 Y_RNA.302-201ENST00000364997 102 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
NUP88Q99567 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.16□□□□□ -1.58
NUP88Q99567 RPL23AP26-201ENST00000412728 464 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC073136.2-201ENST00000417282 849 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AC016907.1-201ENST00000419483 435 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
NUP88Q99567 AL953862.1-201ENST00000423016 168 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.16□□□□□ -1.58
NUP88Q99567 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC5.16□□□□□ -1.58
NUP88Q99567 MED14P1-201ENST00000430517 648 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 MTND1P30-201ENST00000441241 901 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.16□□□□□ -1.58
NUP88Q99567 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC097493.1-201ENST00000463958 372 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.16□□□□□ -1.58
NUP88Q99567 DEFB109F-201ENST00000491870 277 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.16□□□□□ -1.58
NUP88Q99567 AC104057.1-201ENST00000515547 497 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 SNORA31.9-201ENST00000516429 84 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC5.16□□□□□ -1.58
NUP88Q99567 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.16□□□□□ -1.58
NUP88Q99567 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.16□□□□□ -1.58
NUP88Q99567 OR7K1P-201ENST00000546439 926 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AC084757.1-201ENST00000559987 490 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.16□□□□□ -1.58
NUP88Q99567 MAGOH2P-202ENST00000584384 429 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 BPIFA4P-203ENST00000603168 689 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 RNU6-88P-201ENST00000606801 100 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AC078899.5-201ENST00000612475 178 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 AC099063.3-201ENST00000642066 185 ntBASIC5.16□□□□□ -1.58
NUP88Q99567 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
NUP88Q99567 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
NUP88Q99567 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.15□□□□□ -1.58
NUP88Q99567 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.15□□□□□ -1.58
NUP88Q99567 ASNSP1-201ENST00000518311 1939 ntBASIC5.15□□□□□ -1.58
NUP88Q99567 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
NUP88Q99567 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.15□□□□□ -1.58
NUP88Q99567 EIF2AP4-201ENST00000424793 1781 ntBASIC5.15□□□□□ -1.58
NUP88Q99567 RNA5SP88-201ENST00000365560 109 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NUP88Q99567 EIF5P1-201ENST00000400019 1231 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AL121972.1-201ENST00000402023 252 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 RNU2-21P-201ENST00000410368 188 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 OR8G2P-201ENST00000412796 908 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 ZNF736P2Y-201ENST00000416040 1279 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.15□□□□□ -1.59
NUP88Q99567 Z74021.1-201ENST00000423610 407 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.15□□□□□ -1.59
NUP88Q99567 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 NPM1P34-201ENST00000428821 893 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 AC098826.1-201ENST00000433943 471 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 AC129850.1-201ENST00000436203 508 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 TMX2P1-201ENST00000436507 708 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
NUP88Q99567 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 HMGB3P21-201ENST00000452483 547 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 TRGVB-201ENST00000453257 471 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 USP9YP10-201ENST00000454868 628 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 MEMO1P3-201ENST00000459811 302 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 RPS15AP17-201ENST00000470598 390 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC105137.1-201ENST00000484355 562 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC114981.1-201ENST00000503897 678 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.15□□□□□ -1.59
NUP88Q99567 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC5.15□□□□□ -1.59
NUP88Q99567 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.15□□□□□ -1.59
NUP88Q99567 USP9YP5-201ENST00000511770 630 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC021146.3-201ENST00000511911 260 ntBASIC5.15□□□□□ -1.59
NUP88Q99567 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms