Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
ZNF540Q8NDQ6 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RNU1-64P-201ENST00000365443 163 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 MTND4LP20-201ENST00000402379 270 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL022722.2-201ENST00000402519 180 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL445189.1-201ENST00000405722 338 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL023807.1-201ENST00000407932 359 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 MIR1251-201ENST00000408552 70 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RNU4-27P-201ENST00000410889 139 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 LIPT1P1-201ENST00000415870 1186 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RPS6P14-201ENST00000425165 719 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RPL23AP46-201ENST00000438548 490 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 HSFY6P-201ENST00000445573 403 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 DNAJC19P1-201ENST00000455312 319 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC105914.1-201ENST00000511798 226 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-1102P-201ENST00000516149 96 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC099489.2-201ENST00000574976 260 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 VN1R85P-201ENST00000601587 426 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AL590240.3-201ENST00000621416 943 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC098679.5-201ENST00000624394 571 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC090506.2-201ENST00000624521 419 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC118273.1-201ENST00000525324 3006 ntBASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF540Q8NDQ6 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC244517.1-201ENST00000606030 2086 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 SNORD35B-201ENST00000363660 87 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 ATP5F1P4-201ENST00000397288 746 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AL590704.1-201ENST00000402856 794 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AL591034.1-201ENST00000407447 340 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 Z98941.1-201ENST00000407764 100 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 RNA5SP36-201ENST00000410197 133 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-628P-201ENST00000410675 107 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC019070.1-201ENST00000415008 1024 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC108032.1-201ENST00000416706 207 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 BTBD7P2-201ENST00000441962 620 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 MTCO3P16-201ENST00000454456 754 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 CYCSP20-201ENST00000473154 315 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 RPL23AP44-201ENST00000482216 473 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC108475.1-201ENST00000507880 950 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC112518.2-201ENST00000508565 425 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC093824.1-201ENST00000508796 343 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 ARL2BPP5-201ENST00000523141 481 ntBASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.68□□□□□ -1.82
ZNF540Q8NDQ6 TVP23BP1-201ENST00000557500 617 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms