Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC127537.2-201ENST00000439258 465 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RPL23AP89-201ENST00000439324 255 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 MRPL42P4-201ENST00000453267 443 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RPL38P1-201ENST00000460914 211 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC092902.1-201ENST00000486999 259 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RN7SL271P-201ENST00000487601 295 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC021146.3-201ENST00000511911 260 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 EEF1B2P4-201ENST00000551398 348 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC008507.2-201ENST00000588402 1176 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC099785.1-201ENST00000605697 437 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RNU6-1192P-201ENST00000612197 107 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL592148.2-201ENST00000612210 372 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 RNU6-489P-201ENST00000618289 107 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL731566.2-201ENST00000618971 317 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AL590240.3-201ENST00000621416 943 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 AC138915.3-201ENST00000562908 1389 ntBASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CHMP4AQ9BY43 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 IL6STP1-201ENST00000346911 1020 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 RNU6-989P-201ENST00000362756 107 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 RNU6-492P-201ENST00000363035 104 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL024507.1-201ENST00000412741 274 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 MTATP6P19-201ENST00000413797 659 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 TOMM22P1-201ENST00000418578 312 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 ZNF736P7Y-201ENST00000425158 820 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC092634.2-201ENST00000428146 1010 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 PRELID3BP10-201ENST00000431957 584 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 RPS26P28-201ENST00000470806 348 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC103987.1-201ENST00000473394 348 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 RN7SL604P-201ENST00000492589 296 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC084024.2-201ENST00000503480 791 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC068339.2-201ENST00000534395 618 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 RNU4-89P-201ENST00000607443 133 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC018755.4-201ENST00000619715 454 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AC007275.1-201ENST00000621243 671 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL360181.4-201ENST00000621752 134 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 AL049780.3-201ENST00000624612 1583 ntBASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CHMP4AQ9BY43 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 DEFB109C-201ENST00000382575 264 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 DEFB109B-201ENST00000382656 264 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AL583835.1-201ENST00000399570 407 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AL035405.1-201ENST00000400795 710 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 VN1R8P-201ENST00000407739 893 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC092634.6-201ENST00000418558 192 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 RPL21P32-201ENST00000419877 477 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 MTCO3P1-205ENST00000422088 832 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC004975.1-201ENST00000428733 208 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 RPL7P28-201ENST00000437739 740 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 HMGB1P15-201ENST00000453854 435 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC244505.3-201ENST00000454598 187 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 PNPLA4P1-201ENST00000458328 305 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 OR9M1P-201ENST00000459641 921 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 MTCO1P35-201ENST00000515270 228 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 SYF2P1-201ENST00000550658 413 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC124016.2-201ENST00000610058 665 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC008083.4-201ENST00000615076 444 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 CYP3A51P-201ENST00000633513 256 ntBASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CHMP4AQ9BY43 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms