Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 SNORA70C-201ENST00000384538 135 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 MIR142-201ENST00000384835 87 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 MIR512-1-201ENST00000384913 84 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 RNA5SP178-201ENST00000410380 128 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 RPS20P25-201ENST00000412447 352 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL139247.1-201ENST00000422768 325 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 HMGN2P30-201ENST00000423237 256 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC233728.2-201ENST00000425348 757 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL356276.2-201ENST00000435919 558 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC108734.1-201ENST00000439549 399 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 RPS12P2-201ENST00000439728 269 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 RPS4XP15-201ENST00000489210 795 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 NPM1P41-201ENST00000512920 831 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 FAM60DP-201ENST00000524174 632 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 MTCYBP41-201ENST00000528913 1123 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL133271.1-201ENST00000538229 291 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 SNRPGP15-201ENST00000600149 222 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC105227.2-201ENST00000615075 605 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC103798.2-201ENST00000624292 632 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AC009039.2-201ENST00000624524 529 ntBASIC1.8□□□□□ -2.12
LINC00643Q86TS7 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
LINC00643Q86TS7 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC010733.2-201ENST00000589496 5702 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 OR1S2-201ENST00000302592 978 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RN7SKP184-201ENST00000362348 333 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 ACEA_U3.1-201ENST00000363057 217 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 SNORA51.8-201ENST00000384234 132 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MIR129-1-201ENST00000384972 72 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AF274854.1-201ENST00000413236 615 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC004022.2-201ENST00000413824 193 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MTND4LP21-201ENST00000415303 295 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MORF4L1P7-201ENST00000426038 703 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RPL21P66-201ENST00000426566 466 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 GCA-203ENST00000429691 824 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RPS26P56-201ENST00000444468 240 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RPL36AP15-201ENST00000444514 266 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 SLC8A1-AS1-207ENST00000444629 935 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL671855.1-201ENST00000446875 1203 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC084754.1-201ENST00000463466 464 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 PRDX3P4-201ENST00000470828 747 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RPS4XP6-201ENST00000477670 797 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC025518.1-201ENST00000479856 347 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MTCO3P35-201ENST00000485582 781 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC093755.1-201ENST00000512950 1023 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 SNORA31.9-201ENST00000516429 84 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RN7SKP40-201ENST00000517211 242 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 ISCA1P3-201ENST00000577104 373 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC006116.10-201ENST00000591836 581 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC015802.5-201ENST00000607478 399 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MIR7851-201ENST00000610611 160 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC005344.1-201ENST00000613391 459 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC004477.3-201ENST00000614061 590 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC007275.1-201ENST00000621243 671 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 TEX41-279ENST00000629149 609 ntTSL 5 BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC127502.3-201ENST00000636170 1206 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 OR52H1-202ENST00000641796 1061 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms